Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002228-TA|BGIBMGA002228-PA|undefined
(64 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.058
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 0.31
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 0.54
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 26 0.71
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 25 0.94
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 0.94
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 0.94
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 1.2
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 1.6
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 24 2.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 24 2.2
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c... 24 2.9
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 23 3.8
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 5.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 23 5.0
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 23 5.0
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 23 5.0
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 22 8.8
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 22 8.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 22 8.8
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.5 bits (63), Expect = 0.058
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 12 VSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKLVVKVCNA 55
V ED + + E+RKA+L K+ E +A I+D+ + K +A
Sbjct: 127 VQEDLRDLVFEERKAILLETSKDLETTCLATSIWDETLFKAWSA 170
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.1 bits (57), Expect = 0.31
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 17 SNAMLEKRKALLPRLKKEREKRNIAFLIYDKLVVKVCNAERRKK 60
S + + + L+P + E+ FL YD+ ++K+C + K
Sbjct: 426 SRELPKVQSLLIPEITAWEERNGRTFLFYDEPLLKICQEATQPK 469
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 0.54
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 2 KNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKR 38
+N + + ++ + N +LEK+ +L L +E++KR
Sbjct: 82 RNLQKLQLLFKQQSQKNTLLEKQLSLQTELNQEKDKR 118
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 0.71
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 7 FKDIYVSEDYSNAMLEKRKALLPRLKKERE 36
F +IYV +A + LP+LK ERE
Sbjct: 401 FSNIYVGHSIEDAERLGNETFLPKLKAERE 430
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 0.94
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 12 VSEDYSNAMLEKRKALLPRLKKEREKR 38
+ E Y L RK+ +P+LKKE +R
Sbjct: 286 IYERYRREQLTNRKSGIPKLKKEHYER 312
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 0.94
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 13 SEDYSNAMLEKRKALLPRLKK 33
+E SNA+ EK+KA+ P L+K
Sbjct: 509 TEGISNAIEEKQKAMAPALEK 529
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 0.94
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 7 FKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFL 43
F D Y+ +DY NA+LE+ ++ L +E + + F+
Sbjct: 823 FSD-YIDDDYVNAVLEEVQSSLQSNNQEIARAAVGFI 858
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 1.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 11 YVSEDYSNAMLEKRKALLPRLKKEREK 37
+ ED +NA EKR+++L L + E+
Sbjct: 76 HTDEDMANAFAEKRRSVLQELSELEEE 102
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.6 bits (51), Expect = 1.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 17 SNAMLEKRKALLPRLKKEREKRNIAFLIYDKLVVK 51
S+ + ++ KAL+ RL R K AFL D L+V+
Sbjct: 251 SSPLNDQTKALMQRLLFFRHKLQKAFLSPDHLIVE 285
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 17 SNAMLEKRKALLPRLKKEREKRNIAFL 43
S +LE R A LP++ R+K N F+
Sbjct: 158 SGLLLETRIAKLPKIPVSRDKLNSVFV 184
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.2 bits (50), Expect = 2.2
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 2 KNRKSFK--DIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDK 47
+NR F D EDYSN EK K L R +K E N+ L DK
Sbjct: 786 RNRNGFAALDDSDDEDYSNLRREKLKEL--RRQKLLEDGNLNVLEGDK 831
>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 2.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 28 LPRLKKEREKRNIAFLIYDKLVVKVCNAERRKKK 61
L R K EKR+I FL DKL + E K K
Sbjct: 40 LDRNTKNLEKRDIQFLENDKLDLNSHENEGEKTK 73
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.4 bits (48), Expect = 3.8
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 9 DIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKLV--VKVCNAERRKKKP 62
D+++ + AM+ KA P L E +AF + V + CNA K P
Sbjct: 312 DLFIERERVQAMIMMCKAYRPSLTMEFLANTLAFEEMEDCVNFFRSCNAVYDSKDP 367
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.0 bits (47), Expect = 5.0
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 31 LKKEREKRNIAFLIYDKLVVKVCNAERRKKKPT 63
L+ + + +L D++ VKVC+ + + PT
Sbjct: 345 LEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPT 377
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 23.0 bits (47), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1 MKNRKSFKDIYVSEDYSNAML 21
M NRKS + + S+DYS +L
Sbjct: 348 MMNRKSSESLADSQDYSRKIL 368
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 23.0 bits (47), Expect = 5.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 2 KNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLI 44
K ++ KD + E+ + +K+K L ++ + +K +A LI
Sbjct: 67 KRKQELKDQLLKENEGSISSKKKKRLDKYIENKLKKEEVASLI 109
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 23.0 bits (47), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 34 EREKRNIAFLIYDKLVVKVCNAERRKKK 61
E +K I+ LI ++ V+VC+ KKK
Sbjct: 676 EAQKFWISLLISSEVDVEVCHVSMHKKK 703
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 22.2 bits (45), Expect = 8.8
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 11 YVSEDYSNAMLEKRKALLPRLKKEREKRNIAF----LIYDKLVVKVCNAERRKKK 61
Y S + +L+K K PR K+ KR++ L+ V++ E KK
Sbjct: 162 YESMQHQQILLKKLKLHFPRRKENSWKRSLRSGLIELLNQSFEVRMLTHENNNKK 216
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 22.2 bits (45), Expect = 8.8
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 4 RKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKL--VVKVCNAERRKK 60
RK+ Y+ + A+L +R+ + L ++ R+ AF+ D L V +C ++ R +
Sbjct: 283 RKNLFSPYLPQSSIPALLAERRLVTGILIVSKKNRSDAFVSVDGLDAEVFICGSKDRNR 341
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 22.2 bits (45), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 10 IYVSEDYSNAMLEKRKALLPRLKKEREK 37
I + ED++ A LE K +PR K+ K
Sbjct: 2617 IEIDEDFAFAALEYIKDSVPRSKRNTGK 2644
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.134 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,318
Number of Sequences: 5004
Number of extensions: 9654
Number of successful extensions: 40
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 21
length of query: 64
length of database: 2,362,478
effective HSP length: 44
effective length of query: 20
effective length of database: 2,142,302
effective search space: 42846040
effective search space used: 42846040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)
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