Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002228-TA|BGIBMGA002228-PA|undefined
(64 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 29 0.47
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191... 27 1.4
11_06_0661 - 26009838-26010950,26011302-26011802 27 1.9
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 27 1.9
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 27 1.9
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 27 1.9
12_01_0926 + 9178804-9180324,9180612-9181157 27 2.5
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 27 2.5
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 25 5.8
03_05_0194 + 21818122-21818532 25 5.8
01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282 25 5.8
>11_01_0179 -
1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 29.1 bits (62), Expect = 0.47
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 4 RKSFKDIYVSEDYSN--AMLEKRKALLPRLKKEREKRNIAFLIYDKLVVKVC 53
+K +DI + DY N M+ + L+ L+K + ++I F++ ++V+ C
Sbjct: 259 KKVLRDILIDFDYMNPNVMILDERQLINELRKLIQNKSILFMLSMRMVMNNC 310
>01_02_0070 -
10817675-10818024,10818228-10818893,10819094-10819124,
10820038-10820164,10820279-10820736
Length = 543
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 21 LEKRKALLPRLKKEREKRNI-AFLIYDKLVVKVCNAERRKK 60
LEK + +P + E + +++IY LV+ +C RRKK
Sbjct: 179 LEKMRTAIPHTPNDEEMVWMTSYMIYFVLVISLCRICRRKK 219
>11_06_0661 - 26009838-26010950,26011302-26011802
Length = 537
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 7 FKDIYVSEDYSNAMLE-KRKALLPRLKKEREKRNIAFLIYD 46
+K I Y + ++E K++ LLP +KE+EK ++ L+Y+
Sbjct: 250 YKHIVPLYGYCDVLVEEKQRRLLPPFRKEKEKEHL--LVYE 288
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1 MKNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNI 40
+ +K +KD S+ SNA+ K + L RLKK R R +
Sbjct: 80 LNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGL 119
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1 MKNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNI 40
+ +K +KD S+ SNA+ K + L RLKK R R +
Sbjct: 100 LNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGL 139
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1 MKNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNI 40
+ +K +KD S+ SNA+ K + L RLKK R R +
Sbjct: 102 LNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGL 141
>12_01_0926 + 9178804-9180324,9180612-9181157
Length = 688
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 11 YVSED-YSNAMLEKRKALLPRLKKEREK 37
Y +D Y N + E K +LP++K+E EK
Sbjct: 487 YTKQDGYLNNLTEAMKDVLPKVKEENEK 514
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 2 KNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNI 40
+ +K +KD S+ SNA+ K + L RLKK R R +
Sbjct: 11 ERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGL 49
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 14 EDYSNAMLEKRKALLPRLKKEREKRNI--AFLIYDKLVVKVCNAE 56
E+Y + EKRKALL LK E K + +L VK N E
Sbjct: 250 EEYEKVLEEKRKALL-ALKAEERKVEVDKELQAMQQLSVKKANEE 293
>03_05_0194 + 21818122-21818532
Length = 136
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 17 SNAMLEKRKALLPRLKKEREKRNIAFL 43
S A+L++R L R+K+ERE+R I L
Sbjct: 14 SIALLQQRFRELERIKEEREERLIQML 40
>01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282
Length = 404
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 6 SFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKLV 49
SF DI+ SE Y A L ++ +L L + + F + D+LV
Sbjct: 292 SFADIWASESYKAAGLPEKAPVL-ALVHPKNPDMVYFFVKDQLV 334
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,291
Number of Sequences: 37544
Number of extensions: 46102
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 11
length of query: 64
length of database: 14,793,348
effective HSP length: 44
effective length of query: 20
effective length of database: 13,141,412
effective search space: 262828240
effective search space used: 262828240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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