GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002228-TA|BGIBMGA002228-PA|undefined
         (64 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79753-7|CAI91165.1|  218|Caenorhabditis elegans Hypothetical pr...    31   0.076
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    31   0.10 
AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    31   0.10 
U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical pr...    26   2.9  
U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical pr...    26   2.9  
U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical pr...    26   2.9  
U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical pr...    26   2.9  
U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical pr...    26   3.8  
U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical pr...    25   5.0  
Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z46795-2|CAB54311.1|  932|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z46795-1|CAA86788.1|  924|Caenorhabditis elegans Hypothetical pr...    25   6.6  
U80444-11|AAB37793.2|  304|Caenorhabditis elegans Hypothetical p...    25   6.6  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    25   6.6  
U53342-6|AAA96218.1|  466|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U47144-2|AAB52620.1|  235|Caenorhabditis elegans Regulator of g ...    25   8.7  
AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and cap...    25   8.7  

>Z79753-7|CAI91165.1|  218|Caenorhabditis elegans Hypothetical
          protein F20G2.6b protein.
          Length = 218

 Score = 31.5 bits (68), Expect = 0.076
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 10 IYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKLVVKVCNAE 56
          ++  ++ SN++LEK  A   +L+   E+RN A    D+ VV+VC+ E
Sbjct: 1  MFFFQNASNSILEKNNANKNKLRTSSEERNYA----DRSVVRVCHRE 43


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 5    KSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYD 46
            K FK+I  SE       + +K++LP+L+K  E  ++  L+ D
Sbjct: 1613 KEFKEIVHSEIIDPKTKKPKKSMLPKLEKTTESESLTILLMD 1654


>AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 5    KSFKDIYVSEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYD 46
            K FK+I  SE       + +K++LP+L+K  E  ++  L+ D
Sbjct: 1613 KEFKEIVHSEIIDPKTKKPKKSMLPKLEKTTESESLTILLMD 1654


>U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical
           protein M03A1.6a protein.
          Length = 765

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   DIYVSEDYSNAMLEKRKAL-LPRLKKEREKRNIAFLIYDKLVVK 51
           D Y+  D +NA  E RKAL   +L +E+ + N+   I+  LV K
Sbjct: 442 DEYLKRDDTNASEEARKALEAMKLAREQLRDNLEGGIHKLLVTK 485


>U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical
           protein M03A1.6b protein.
          Length = 753

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   DIYVSEDYSNAMLEKRKAL-LPRLKKEREKRNIAFLIYDKLVVK 51
           D Y+  D +NA  E RKAL   +L +E+ + N+   I+  LV K
Sbjct: 430 DEYLKRDDTNASEEARKALEAMKLAREQLRDNLEGGIHKLLVTK 473


>U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6d protein.
          Length = 762

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   DIYVSEDYSNAMLEKRKAL-LPRLKKEREKRNIAFLIYDKLVVK 51
           D Y+  D +NA  E RKAL   +L +E+ + N+   I+  LV K
Sbjct: 439 DEYLKRDDTNASEEARKALEAMKLAREQLRDNLEGGIHKLLVTK 482


>U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6c protein.
          Length = 762

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   DIYVSEDYSNAMLEKRKAL-LPRLKKEREKRNIAFLIYDKLVVK 51
           D Y+  D +NA  E RKAL   +L +E+ + N+   I+  LV K
Sbjct: 439 DEYLKRDDTNASEEARKALEAMKLAREQLRDNLEGGIHKLLVTK 482


>U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical
           protein C18B2.6 protein.
          Length = 599

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 16  YSNAMLEKRKALLPRLKKEREKRNIAFLIY 45
           YS+   E  K LLPR + E+ KR I   IY
Sbjct: 448 YSSIPSEASKKLLPREEWEKMKRKIILDIY 477


>U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical
          protein K09E3.7 protein.
          Length = 859

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 22 EKRKALLPRLKKEREKRNIAFLIYDKLVVKVCNAERRKKK 61
          E RK    +  KE  +RN  +  + KL  K+   ERR K+
Sbjct: 60 ENRKKRYRKDCKEYRERNREYATFQKLFFKITAIERRFKQ 99


>Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 16  YSNAMLEKRKALLPRLKKEREKR 38
           Y   + EK K +  RLK+++EKR
Sbjct: 851 YRTELWEKMKPVYERLKRDKEKR 873


>Z46795-2|CAB54311.1|  932|Caenorhabditis elegans Hypothetical
          protein T19E10.1b protein.
          Length = 932

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 25 KALLPRLKKEREKRNIAFLIYDKL 48
          K +   L++++EKRNI  + YD L
Sbjct: 30 KDIFEMLEEQKEKRNINIIQYDSL 53


>Z46795-1|CAA86788.1|  924|Caenorhabditis elegans Hypothetical
          protein T19E10.1a protein.
          Length = 924

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 25 KALLPRLKKEREKRNIAFLIYDKL 48
          K +   L++++EKRNI  + YD L
Sbjct: 30 KDIFEMLEEQKEKRNINIIQYDSL 53


>U80444-11|AAB37793.2|  304|Caenorhabditis elegans Hypothetical
           protein F26B1.1 protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 4   RKSFKDIYVSEDYSNAMLEKRKAL 27
           RKS KD+   ED SN+   K+KA+
Sbjct: 84  RKSKKDVEDDEDDSNSKSAKKKAV 107


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 16  YSNAMLEKRKALLPRLKKEREKR 38
           Y   + EK K +  RLK+++EKR
Sbjct: 851 YRTELWEKMKPVYERLKRDKEKR 873


>U53342-6|AAA96218.1|  466|Caenorhabditis elegans Hypothetical
           protein F01G12.6 protein.
          Length = 466

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 12  VSEDYSNAMLEKRKALLPRLKKEREK 37
           V ED S  +++KRK L  +LK E+EK
Sbjct: 310 VRED-SEVLVKKRKELEDQLKDEKEK 334


>U47144-2|AAB52620.1|  235|Caenorhabditis elegans Regulator of g
           protein signalingprotein 9 protein.
          Length = 235

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 13  SEDYSNAMLEKRKALLPRLKKEREKRNIAFLIYDKLVVKVC 53
           S+DY +  LE  +    R K  R++   A  IYDK V   C
Sbjct: 130 SDDYVDFWLESGEYRWTRTKPGRKRDIEAQRIYDKFVYGEC 170


>AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 2 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 3   NRKSFKDIYVSEDYSNAMLEKRKALLPRLKKERE 36
           +R S K   V E+    M+E++KA+L R  K+ E
Sbjct: 826 SRDSKKGQKVLEEKMKKMIEEKKAVLKRKMKDME 859


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,070
Number of Sequences: 27539
Number of extensions: 52793
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 17
length of query: 64
length of database: 12,573,161
effective HSP length: 44
effective length of query: 20
effective length of database: 11,361,445
effective search space: 227228900
effective search space used: 227228900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)