GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002228-TA|BGIBMGA002228-PA|undefined
         (64 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   2.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   2.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   2.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   3.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   6.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   6.1  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            19   6.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.2 bits (40), Expect = 2.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 40  IAFLIYDKLVVKVCNAERRKKKPT 63
           + F++  + + ++C+A   K KPT
Sbjct: 90  LTFVVPHQFIKRICSALFGKIKPT 113


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 53  CNAERRKKKP 62
           C AE RKK+P
Sbjct: 443 CTAELRKKEP 452


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 53  CNAERRKKKP 62
           C AE RKK+P
Sbjct: 429 CTAELRKKEP 438


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 53  CNAERRKKKP 62
           C AE RKK+P
Sbjct: 463 CTAELRKKEP 472


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 53  CNAERRKKKP 62
           C AE RKK+P
Sbjct: 412 CTAELRKKEP 421


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 1   MKNRKSFKDIYVSEDYSNAMLEKRKALLPRLKKERE 36
           +KN + FKD     DYS      +K  +   +KE E
Sbjct: 487 LKNTEIFKDKSDWFDYSEVSKWVQKGQICLKEKENE 522


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 39  NIAFLIYDKLVVKVCNAERRKKK 61
           N +   Y+K   K C+ E+R  K
Sbjct: 440 NASVTPYNKNYTKFCSTEKRLTK 462



 Score = 18.6 bits (36), Expect = 6.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 37  KRNIAFLIYDKLV 49
           KRNI   I +KLV
Sbjct: 306 KRNICIAIKEKLV 318


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 21  LEKRKALLPRLKKEREKRNIAFLIYDKLVVKVCNAERRK 59
           LEK K L+P   +      +  L   K  +K      RK
Sbjct: 68  LEKLKVLVPLGPETSRHTTLGLLTKAKRFIKSLEERERK 106


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 4   RKSFKDIYVSEDYSNAMLEKRKALLPRL 31
           R+  ++++ + ++ N M  K K  +PRL
Sbjct: 206 RRMGREVF-AVNFMNVMRMKLKQFMPRL 232


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)

Query: 30 RLKKEREKRNI 40
          +LKK+R K+N+
Sbjct: 5  QLKKKRRKKNL 15


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,282
Number of Sequences: 429
Number of extensions: 704
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 64
length of database: 140,377
effective HSP length: 44
effective length of query: 20
effective length of database: 121,501
effective search space:  2430020
effective search space used:  2430020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)