GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002227-TA|BGIBMGA002227-PA|IPR004117|Olfactory receptor,
Drosophila
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   0.59 
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   4.2  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   5.5  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   7.3  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    25   7.3  

>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 109 VKTMVSVSLSSKPFVRHLVMKMHREVLVQHGTGRMSTTRLSPPSLEH 155
           V+ + + +LS  PF ++LV+K H  +      G M+ +  S  ++EH
Sbjct: 314 VEQLKAGTLSRLPFQKYLVLKYHMLINNAQAAGMMAFSSSSISAIEH 360


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 67  QDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLSIGV 109
           Q  ++C   EYMD  H   V  +  +S IPL  +A+   +I +
Sbjct: 255 QADLFCEWQEYMDGLHNFPVQGVAAESVIPLNDRALRKTAIAM 297


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 121 PFVRHLVMKMHREVLVQHGTGRMSTTRLSPPSLEHLVAVSF 161
           PF   LV   H+E +  + T ++      PP++ +L+++ F
Sbjct: 237 PFNHELVEAWHQESITYYPTTKVGLNDWVPPTVLYLMSLFF 277


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 61  YMSDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLS 106
           +M+  LQ  +YCVP+  +     +MV   F ++  PL ++++ MLS
Sbjct: 143 FMNSILQALMYCVPFYNLLKQINRMVPYNFERT-TPL-IESLTMLS 186


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 60 GYMSDKLQDAVYCVPWEY-MDTSHRKMV 86
          G+  D L  ++Y  PWEY  DTS +K +
Sbjct: 54 GFPED-LNKSMYITPWEYAADTSVQKAI 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,717
Number of Sequences: 5004
Number of extensions: 16576
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 50 (24.2 bits)