GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002227-TA|BGIBMGA002227-PA|IPR004117|Olfactory receptor,
Drosophila
         (162 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    35   0.036
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411...    29   1.4  
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367...    29   2.4  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    28   3.2  
05_03_0515 + 14930736-14932697                                         28   4.2  
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     27   7.3  
06_01_0016 + 184804-185025,185121-185237,185324-185737,185827-18...    27   9.6  
01_06_0219 + 27649784-27650959                                         27   9.6  

>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 34.7 bits (76), Expect = 0.036
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 129 KMHREVLVQHGTGRMSTTRL---SPPSLEHLVAV 159
           + H EVL+Q GT R STT+L     PSL+H V V
Sbjct: 409 QQHNEVLLQKGTSRTSTTQLINHQAPSLQHAVKV 442


>03_05_0487 +
           24838620-24838967,24840526-24840747,24840819-24841109,
           24841316-24841513,24841641-24841705,24841788-24841874,
           24841988-24842108,24842200-24842244,24842321-24842458,
           24842571-24842643,24842723-24842799,24842882-24842989,
           24843108-24843224,24843524-24843679,24843780-24843881,
           24844036-24844161,24844237-24844314,24844390-24844485,
           24844592-24844707,24844781-24844850,24844930-24844983,
           24845062-24845205,24845297-24845596,24845780-24846202,
           24846316-24846429
          Length = 1222

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/98 (20%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 50  IQISVIFELLGYMSDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLSIGV 109
           I I ++F  LG+++DK  D +  + +++ DT   +++     ++ + +Q + + +  IG 
Sbjct: 305 IPIIIVFRALGFVADK--DILEHICYDFSDTQMMELLRPSLEEAFV-IQNQQVALDYIG- 360

Query: 110 KTMVSVSLSSKPFVRHLVMKMHREVLVQHGTGRMSTTR 147
           K   +V ++ +  +++    + +E+L   G G    T+
Sbjct: 361 KRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETK 398


>03_05_0346 +
           23335753-23335854,23336268-23336473,23336530-23336705,
           23336832-23337064,23337546-23337963,23338045-23338262,
           23338905-23339168
          Length = 538

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 92  QSQIPLQLKAMNMLSIGVKTMVSVSLSSKPFVRHLVMKMHREVLVQHGTGRMSTTRLSPP 151
           QS+ P+ +  MN  ++G   +  ++L  +  +R+L        L+  GTG+    ++ P 
Sbjct: 428 QSEGPIYVSIMNKSNVGTDGLYIITLGRQFAIRYLPEGEQTLTLLTTGTGKAWQVKMRPR 487

Query: 152 S 152
           S
Sbjct: 488 S 488


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 108 GVKTMVSVSLSSKP--FVRHLVMKMHREVLVQHGTGR-MSTTRLSPPSLEHLVAVS 160
           G++++++  +++K   F+ HLV K+H     ++  GR +ST  +    + +L A+S
Sbjct: 301 GLRSILAARIANKADGFIEHLVSKLHITYRSRYAEGRELSTPEIRDALIPYLEALS 356


>05_03_0515 + 14930736-14932697
          Length = 653

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 107 IGVKTMVSVSLSSKPFVRHLVM 128
           +G KTMV  +LSS P VR+L++
Sbjct: 187 LGYKTMVMFALSSSPVVRNLLV 208


>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 62  MSDKLQDAVYCVPWEYMDTSHRKMV-YMMFRQSQIPLQLKAMNMLSIGVKTMVSVSLSSK 120
           + DKL+     + W  MDT H     Y +    + P QLK + +++     + S    ++
Sbjct: 742 LQDKLELESLALRWN-MDTEHANTAAYELIEILRPPQQLKELELVAYEGDKLPSWMTHTE 800

Query: 121 PFVRHLV 127
           P+++ LV
Sbjct: 801 PYLKSLV 807


>06_01_0016 +
           184804-185025,185121-185237,185324-185737,185827-186888
          Length = 604

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 108 GVKTMVSVSLSSKPF-VRHLVMKMHREVLVQHGTGRMSTTRLSPPSLE 154
           GV   + ++L + P+   H+  ++  +V + H   + ++TR  PP  +
Sbjct: 87  GVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQFQRASTRTDPPDTQ 134


>01_06_0219 + 27649784-27650959
          Length = 391

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 52 ISVIFELLGYMSDKLQDAVYCVPWE----YMDTSHRKMVYMMFRQSQIP 96
          + VIFE L  ++D+   A  C PW     ++D   R + +++      P
Sbjct: 18 LGVIFEQLSCLADRACFAAVCRPWRTAAAFVDAPQRGLPWLLLPSRDAP 66


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,716
Number of Sequences: 37544
Number of extensions: 97408
Number of successful extensions: 269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 8
length of query: 162
length of database: 14,793,348
effective HSP length: 77
effective length of query: 85
effective length of database: 11,902,460
effective search space: 1011709100
effective search space used: 1011709100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)