GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002227-TA|BGIBMGA002227-PA|IPR004117|Olfactory receptor,
Drosophila
         (162 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022983-7|AAK82916.1|  376|Caenorhabditis elegans Hypothetical ...    31   0.53 
AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm rec...    29   1.2  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   2.8  

>AF022983-7|AAK82916.1|  376|Caenorhabditis elegans Hypothetical
           protein R13D11.3 protein.
          Length = 376

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 12/51 (23%), Positives = 27/51 (52%)

Query: 86  VYMMFRQSQIPLQLKAMNMLSIGVKTMVSVSLSSKPFVRHLVMKMHREVLV 136
           +Y+M     +PLQLK    +++G+    +++L    F R +  ++H   ++
Sbjct: 158 LYIMVTAQPLPLQLKISATVTVGIALSRNIALFFPAFYRRMDQELHSNAVI 208


>AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 211 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 40  FLTLVLNQQLIQISVIFEL-LGYMSDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQ 98
           F+ ++L+   I IS++F    G       DA++     +    H ++ Y +  Q+ IP+ 
Sbjct: 204 FIGIMLDSMSINISLMFSAYFGIKCWLRMDAIFSSSSTHFQNLHSQLFYALVAQAMIPIF 263

Query: 99  LKAMNMLSIGVKTMVS 114
           L  +  L++ + T ++
Sbjct: 264 LMHIPALTMFIFTFLN 279


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 9/27 (33%), Positives = 21/27 (77%)

Query: 42  TLVLNQQLIQISVIFELLGYMSDKLQD 68
           +L ++ ++ ++S +F+++GY  DKL+D
Sbjct: 128 SLEIDHRISELSAMFDVIGYAHDKLED 154


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 46  NQQLIQISVIFELLGYMSDKLQDAVYC 72
           N ++I +S +  L+GY+ +K++D VYC
Sbjct: 234 NARIIVVSSLV-LIGYLDEKVRDMVYC 259


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,563
Number of Sequences: 27539
Number of extensions: 87345
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 4
length of query: 162
length of database: 12,573,161
effective HSP length: 76
effective length of query: 86
effective length of database: 10,480,197
effective search space: 901296942
effective search space used: 901296942
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)