GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002226-TA|BGIBMGA002226-PA|IPR004117|Olfactory receptor,
Drosophila
         (90 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    30   0.046
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    24   3.0  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    24   3.0  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    24   4.0  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    23   9.2  

>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 30.3 bits (65), Expect = 0.046
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 23  QDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLSIGVKTMASILKTSVTYYLML 82
           Q  ++C   EYMD  H   V  +  +S IPL  +A+   +I +  +A   K S    L L
Sbjct: 255 QADLFCEWQEYMDGLHNFPVQGVAAESVIPLNDRALRKTAIAMNLVAHHCKDSTLLGLFL 314

Query: 83  KT 84
           ++
Sbjct: 315 ES 316


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 19 NDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMN 59
          N+K ++ +     EY+D + +  VY+  + +QI  + +  N
Sbjct: 49 NEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSRVSN 89


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 20 DKLQDAVYCVPWEY-MDTSHRKMV 42
          + L  ++Y  PWEY  DTS +K +
Sbjct: 57 EDLNKSMYITPWEYAADTSVQKAI 80


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 18  VNDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLS 62
           +N  LQ  +YCVP+  +     +MV   F ++  PL ++++ MLS
Sbjct: 144 MNSILQALMYCVPFYNLLKQINRMVPYNFERT-TPL-IESLTMLS 186


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 16  QQVNDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPL-QLKAMNMLSIGVKTMASILKT 74
           Q +N   +DA++C+           +  + FR  QI L Q    N++S G     + +  
Sbjct: 171 QNINPSKKDAIFCIA--------NLLCLLYFRLKQIRLCQTIQANVISSGADISRATMAE 222

Query: 75  SVT--YYL 80
            VT  YYL
Sbjct: 223 LVTFRYYL 230


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,708
Number of Sequences: 5004
Number of extensions: 9328
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 90
length of database: 2,362,478
effective HSP length: 61
effective length of query: 29
effective length of database: 2,057,234
effective search space: 59659786
effective search space used: 59659786
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)