GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002226-TA|BGIBMGA002226-PA|IPR004117|Olfactory receptor,
Drosophila
         (90 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    27   1.8  
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418...    25   7.4  

>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
            30288447-30288641,30288743-30289363,30289688-30290257,
            30290332-30293638,30293764-30293863,30293978-30295014,
            30295256-30295604,30296299-30296374,30296456-30297022,
            30297094-30297238,30298281-30298405,30298491-30298582,
            30298646-30298828,30298946-30299058,30299499-30299649,
            30299720-30299882
          Length = 2701

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 33   YMDTSHRK-MVYMMFRQSQIPLQLKAMNMLSIGVKTMASILKTSVTYYL 80
            Y+ T   K MV ++F   +  LQ+  +++L   +K +A +  TS+ Y +
Sbjct: 1100 YLSTHAPKIMVLLIFAIDKETLQMDGLDVLHFFIKRLAEVSCTSIKYVM 1148


>06_01_0584 -
           4178391-4178732,4178854-4178915,4180361-4180481,
           4180592-4180732,4180830-4180959,4182306-4182436,
           4182528-4182601,4182680-4182741,4183135-4183209,
           4184658-4184760,4184835-4184991,4185549-4185743,
           4186204-4186282,4186697-4186806,4187249-4187374,
           4187475-4187541,4187622-4187791,4187880-4188018,
           4188361-4188522,4188672-4188772,4188852-4188994,
           4189438-4189537,4190364-4190414,4191062-4191169,
           4191279-4191494,4191585-4191721,4191820-4191915,
           4192017-4192234,4192764-4192925,4193006-4193163,
           4194221-4194379
          Length = 1364

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 6   GLAVLIYYAFQQVNDKLQDAVYCVPWEY 33
           G  VLIY  FQ + D L+D +    W Y
Sbjct: 627 GHRVLIYSQFQHMLDLLEDYLSYRKWSY 654


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,226
Number of Sequences: 37544
Number of extensions: 47597
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 14,793,348
effective HSP length: 69
effective length of query: 21
effective length of database: 12,202,812
effective search space: 256259052
effective search space used: 256259052
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)