GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002226-TA|BGIBMGA002226-PA|IPR004117|Olfactory receptor,
Drosophila
         (90 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-14|AAA62568.1|  365|Caenorhabditis elegans Hypothetical p...    25   4.9  
Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical p...    25   6.5  
Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical pr...    25   6.5  

>U21324-14|AAA62568.1|  365|Caenorhabditis elegans Hypothetical
           protein C35D10.12 protein.
          Length = 365

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 6   GLAVLIY-YAFQQVNDKLQDAVYCVPWEYMDTS 37
           G  +LIY +AF+Q N K       VPW   +T+
Sbjct: 136 GGQMLIYAWAFEQPNGKFASQDILVPWNMHETA 168


>Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical
           protein F36D3.13 protein.
          Length = 367

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 22  LQDAVYCVPWEYMDTSHRKMVYMMFRQSQ-IPLQLKAMNMLSI 63
           + ++++CV    M T +R+ V  MF ++  + +Q+    M S+
Sbjct: 313 INNSLHCVLCYLMSTKYREAVKSMFNKTNTVDIQMSDQRMTSV 355


>Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical
          protein ZC455.7 protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 7  LAVLIYYAFQQVNDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLSIGVK 66
          L +LI       +  LQ  ++   + Y D +  KM+ ++F+ + +  Q    N+   G  
Sbjct: 20 LCLLIVGRSNTFHPNLQGPIWFTAFVYFDLTISKMLTIVFQTTYLVEQ----NVPEGG-- 73

Query: 67 TMASILKTSVTYYLMLKTITA 87
           M  IL T+ T+Y  L T+ A
Sbjct: 74 -MTMILWTAATHYHFLFTVMA 93


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,568
Number of Sequences: 27539
Number of extensions: 48526
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 3
length of query: 90
length of database: 12,573,161
effective HSP length: 69
effective length of query: 21
effective length of database: 10,672,970
effective search space: 224132370
effective search space used: 224132370
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)