GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002225-TA|BGIBMGA002225-PA|IPR005336|Protein of unknown
function UPF0041
         (115 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   1.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   3.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 66  MRFAWKVQPRNLLLFACHFTNECAQLTQGARFINYH 101
           MR AW ++ +NL L          ++ QG R   +H
Sbjct: 608 MRGAWPLKLQNLTLSGKGLKKITGKMFQGVRSPTFH 643


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 65 FMRFAWKVQPRNLLLFACHFTNECAQLTQ 93
          F+R+    QPRN+  FA   T+   Q  Q
Sbjct: 21 FVRWLNSQQPRNVPNFAAPSTSTAVQRPQ 49


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,511
Number of Sequences: 317
Number of extensions: 975
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 115
length of database: 114,650
effective HSP length: 49
effective length of query: 66
effective length of database: 99,117
effective search space:  6541722
effective search space used:  6541722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)