Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002225-TA|BGIBMGA002225-PA|IPR005336|Protein of unknown
function UPF0041
(115 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ... 132 1e-32
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces... 42 2e-05
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 0.99
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 0.99
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 4.0
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 24 7.0
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 24 7.0
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 23 9.2
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 23 9.2
>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 141
Score = 132 bits (319), Expect = 1e-32
Identities = 57/100 (57%), Positives = 72/100 (72%)
Query: 3 ALARKLVNQLKSKEFRDYLMSTHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYS 62
++ R+ + LKS +FR YL STHFWGP++N+GIP+AAI D +KDP ISG+MT AL LYS
Sbjct: 14 SVTRRFITWLKSPDFRKYLCSTHFWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYS 73
Query: 63 LMFMRFAWKVQPRNLLLFACHFTNECAQLTQGARFINYHY 102
+FMR+AW V PRN LL CH N Q QG RF+N+ Y
Sbjct: 74 SVFMRYAWMVSPRNYLLLGCHAFNTTVQTAQGIRFVNFWY 113
>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 42.3 bits (95), Expect = 2e-05
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 23 STHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLFAC 82
+ HFW P W + L+ I D + P ++S + AL ++ R++ V+P+N
Sbjct: 18 TVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRPKNYFNATV 77
Query: 83 HFTNECAQLTQGARFINY 100
+F Q +R + Y
Sbjct: 78 NFFLAIVGAVQVSRILVY 95
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.6 bits (56), Expect = 0.99
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 86 NECAQLTQGARFINYHYIQGPKEVQEKK 113
+EC +G +F+ YI E++ KK
Sbjct: 665 SECKDYAEGPKFLQTRYISKQSEIESKK 692
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 0.99
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 39 AIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLL 79
++A + D + I +F LY+ F W + P +LLL
Sbjct: 619 SVAPEKVDNSSIEQSSSFLTKLYTFPFTIITWLMHPTHLLL 659
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 47 PNFISGKMTFALSLYSLMF 65
PNF + TFAL+ Y+L F
Sbjct: 176 PNFKASDKTFALAFYNLPF 194
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 21 LMSTHFWGPVANWGIPLAAI 40
L+ T F+G ANWG L A+
Sbjct: 343 LVKTAFFGEDANWGRILCAV 362
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 6 RKLVNQLKSKEFRDYLMSTHFWGPVANWGIP 36
RKL +++ ++ D +M W P A WG P
Sbjct: 514 RKLFDEIFPRQCADTVMR---WVPKAEWGCP 541
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 22 MSTHFWGPVANWGIPLAAIADTRKDPNFISGKMTF 56
M+ + V N+GIPLA+ P F + ++F
Sbjct: 137 MARQMYCDVTNFGIPLASEMLDNISPQFFADLLSF 171
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 23.4 bits (48), Expect = 9.2
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 16 EFRDYLMSTHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPR 75
EFR +L+ FW + +PL + + + + + +++LY +F F W +P
Sbjct: 385 EFRYFLLPFLFW----RFHLPLPSGRECLME--YALHMVINSVTLYIFLFRTFIWPSEPN 438
Query: 76 NLLLF 80
L F
Sbjct: 439 ALQRF 443
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.135 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,972
Number of Sequences: 5004
Number of extensions: 17241
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 9
length of query: 115
length of database: 2,362,478
effective HSP length: 64
effective length of query: 51
effective length of database: 2,042,222
effective search space: 104153322
effective search space used: 104153322
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 48 (23.4 bits)
- SilkBase 1999-2023 -