Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002225-TA|BGIBMGA002225-PA|IPR005336|Protein of unknown
function UPF0041
(115 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0104 - 12389907-12389943,12390086-12390203,12390339-123903... 94 2e-20
08_02_0653 - 19729325-19729378,19730137-19730174,19730391-197304... 59 1e-09
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665... 53 6e-08
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 52 1e-07
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937... 45 1e-05
04_03_0955 + 21215380-21215991,21216058-21216639 28 2.1
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 27 4.8
04_03_0950 - 21049767-21050450 27 4.8
>09_03_0104 -
12389907-12389943,12390086-12390203,12390339-12390393,
12391607-12391702
Length = 101
Score = 94.3 bits (224), Expect = 2e-20
Identities = 49/93 (52%), Positives = 57/93 (61%), Gaps = 9/93 (9%)
Query: 23 STHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLFAC 82
+THFWGPVANWG LA + D K P ISG MT L FMRFAW VQPRN LL AC
Sbjct: 17 TTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAGL------FMRFAWMVQPRNYLLLAC 70
Query: 83 HFTNECAQLTQGARFINYHYIQGPKEVQEKKSQ 115
H +NE QL Q +R+ QG E +E ++Q
Sbjct: 71 HASNESVQLYQMSRWAR---AQGYLEKKEPEAQ 100
>08_02_0653 -
19729325-19729378,19730137-19730174,19730391-19730445,
19731401-19731496
Length = 80
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 23 STHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLFAC 82
+THFWGPVANWG LA + D K P ISG MT ++++ + W + R L
Sbjct: 17 TTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTADVTIFFYKLDQIKWNLALRQALHPGA 76
Query: 83 H 83
H
Sbjct: 77 H 77
>08_02_0303 +
15566152-15566209,15566265-15566363,15566465-15566517,
15566695-15566768,15566858-15566909
Length = 111
Score = 52.8 bits (121), Expect = 6e-08
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 21 LMSTHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLF 80
L HFW P WGI +A +AD K P IS A++ +++ R++ + P+N LF
Sbjct: 17 LCDVHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVITPKNWNLF 76
Query: 81 ACHFTNECAQLTQGARFINYHYIQGPKE 108
+ + L Q +R I Y K+
Sbjct: 77 SVNVAMAGTGLYQLSRKIRKDYFSDQKD 104
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 25 HFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLFACHF 84
HFW P WGI +A +AD K P IS A++ +++ R++ + P+N LF+ +
Sbjct: 52 HFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVITPKNWNLFSVNV 111
Query: 85 TNECAQLTQGARFINYHYIQGPKE 108
L Q +R I Y K+
Sbjct: 112 AMAGTGLYQLSRKIRKDYFSDEKD 135
>07_03_0848 +
21992610-21992724,21993009-21993137,21993625-21993723,
21993833-21993885,21994157-21994230,21994382-21994433
Length = 173
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 25 HFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLFACHF 84
HFW P WGI +A +AD K P IS ++ +++ R+ + P N L + +
Sbjct: 83 HFWAPTFKWGISIANVADFAKPPEMISYPQQVVVACSGVIWARWGMVITPINWNLSSVNA 142
Query: 85 TNECAQLTQGARFINYHYIQGPK 107
+ Q +R I + Y K
Sbjct: 143 AMAVTGVCQLSRKIRHDYFSDEK 165
>04_03_0955 + 21215380-21215991,21216058-21216639
Length = 397
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 8 LVNQLKSKEFRDYLM--STHFWGPVANWGIPL 37
L + ++ K+ Y M +TH W PV W +PL
Sbjct: 197 LRDPMQMKDVGTYCMDIATHTWSPVGKWMLPL 228
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 40 IADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLL 78
I ++ P F+SG L L F+R++W R +L
Sbjct: 220 IRQYKESPKFLSGGTLHPYQLEGLNFLRYSWYHNKRVIL 258
>04_03_0950 - 21049767-21050450
Length = 227
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 22 MSTHFWGPVANWGIPL 37
++TH W PV W +PL
Sbjct: 133 IATHTWSPVGKWMLPL 148
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.135 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,685
Number of Sequences: 37544
Number of extensions: 96618
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 14,793,348
effective HSP length: 73
effective length of query: 42
effective length of database: 12,052,636
effective search space: 506210712
effective search space used: 506210712
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)
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