GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002225-TA|BGIBMGA002225-PA|IPR005336|Protein of unknown
function UPF0041
         (115 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52569| Best HMM Match : UPF0041 (HMM E-Value=0.9)                   51   2e-07
SB_19663| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_52569| Best HMM Match : UPF0041 (HMM E-Value=0.9)
          Length = 86

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 21/26 (80%), Positives = 24/26 (92%)

Query: 30 VANWGIPLAAIADTRKDPNFISGKMT 55
          VANWG+PLAAIAD +KDP +ISGKMT
Sbjct: 29 VANWGLPLAAIADMKKDPEYISGKMT 54


>SB_19663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 12  LKSKEFRDYLMSTHFWGPVAN--WGIPL 37
           +K K F ++L + H W    N  WG P+
Sbjct: 369 VKEKRFHNWLQNAHDWNVSRNRYWGTPI 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,456,443
Number of Sequences: 59808
Number of extensions: 115956
Number of successful extensions: 229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 2
length of query: 115
length of database: 16,821,457
effective HSP length: 73
effective length of query: 42
effective length of database: 12,455,473
effective search space: 523129866
effective search space used: 523129866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)