GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002225-TA|BGIBMGA002225-PA|IPR005336|Protein of unknown
function UPF0041
         (115 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-9|CAA83622.1|  160|Caenorhabditis elegans Hypothetical pr...   136   5e-33
U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...    40   4e-04
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    31   0.20 
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    29   0.61 
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    28   1.4  
Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical pr...    26   5.7  

>Z32683-9|CAA83622.1|  160|Caenorhabditis elegans Hypothetical
           protein R07E5.13 protein.
          Length = 160

 Score =  136 bits (328), Expect = 5e-33
 Identities = 60/99 (60%), Positives = 75/99 (75%), Gaps = 3/99 (3%)

Query: 11  QLKSKEFRDYLMSTHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAW 70
           Q  + E++ Y +STHFWGPVANWG+PLAA+ D +K+P+ ISG MT AL +YS +FMRFAW
Sbjct: 14  QHSTAEWKHYFLSTHFWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFAW 73

Query: 71  KVQPRNLLLFACHFTNECAQLTQGARFINY---HYIQGP 106
            VQPRNLLLFACHF N  AQ  Q  RF+N+   HY++ P
Sbjct: 74  HVQPRNLLLFACHFANFSAQGAQLGRFVNHNYLHYVEDP 112


>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 23/86 (26%), Positives = 36/86 (41%)

Query: 26  FWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYSLMFMRFAWKVQPRNLLLFACHFT 85
           FW P   W +  A +AD  +  + +S     AL     ++ R+   + P N  L + +F 
Sbjct: 42  FWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITPINYYLSSVNFF 101

Query: 86  NECAQLTQGARFINYHYIQGPKEVQE 111
             C  L Q  R  +Y Y     E +E
Sbjct: 102 VMCTGLAQLCRIAHYRYQNPDWETKE 127


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
           family protein 2 protein.
          Length = 1551

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 5   ARKLVNQL--KSKEFRDYLMSTHFWGPVANWGIPLAAIADTRKDPNFISGKMTFALSLYS 62
           ARK + +L  ++KE R  L+STH           +A ++   + P+ + GK       Y+
Sbjct: 500 ARKDIWKLLQRNKEGRTILLSTHHMDEADVLSDRIAILSQDFEKPDLLDGKRLIFQHFYA 559

Query: 63  LMFMRFAWKVQPRNLLLF 80
           L+  R  + ++ +   LF
Sbjct: 560 LLVCRINYTLKSKRTFLF 577


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
           roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 74  PRNLLLFACHFTNECAQLTQGARFINYHYIQGPKEVQEKK 113
           P  +    CH T+   QL  G+R  N+H I  P +V   K
Sbjct: 124 PHEIDFVVCHTTSSVCQLIFGSRSDNWHTITLPGDVAASK 163


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 4   LARKLVNQLKSKEFRDYLMSTHFWGPVANWG 34
           LARKL   +  KEF   L  TH W P AN G
Sbjct: 604 LARKLTMYIMRKEFVSGLSQTHRWQP-ANEG 633


>Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical
           protein C25A1.5 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 49  FISGKMTFALSLYSLMFMRFAWKVQPRNLLLFACHF 84
           F+ G +T+ L+ YSL    F WK  P +      HF
Sbjct: 168 FVIGVLTWTLTEYSLHRWVFHWKPSPDSPNQILLHF 203


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,239
Number of Sequences: 27539
Number of extensions: 91481
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 12,573,161
effective HSP length: 72
effective length of query: 43
effective length of database: 10,590,353
effective search space: 455385179
effective search space used: 455385179
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)