GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002224-TA|BGIBMGA002224-PA|undefined
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    28   2.7  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    28   2.7  

>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 64  DNCSRYNPSDLVLNGDLAFGVEKQLENQAKMALRLANFISAFLQV 108
           D    Y  +DL+L GDL + + ++  N++ + + +   +SA + +
Sbjct: 98  DETKIYLVTDLMLGGDLRYHISQRKFNESVIRIWMVELVSALIYI 142


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 154 EKFPNRTYFAPFAYKTELNVRKFRLEDL 181
           EKFP  T  + F+    LNVR+FR  DL
Sbjct: 128 EKFPQETALSKFSVDG-LNVRQFRFRDL 154


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,339
Number of Sequences: 5004
Number of extensions: 82068
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 3
length of query: 407
length of database: 2,362,478
effective HSP length: 74
effective length of query: 333
effective length of database: 1,992,182
effective search space: 663396606
effective search space used: 663396606
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)