GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002224-TA|BGIBMGA002224-PA|undefined
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0575 + 5107383-5107421,5107514-5107615,5107764-5107964,510...    30   2.9  
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223...    30   3.8  
01_01_0674 + 5162291-5162376,5162530-5162560,5162689-5163207,516...    30   3.8  
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091     29   5.1  

>08_01_0575 +
           5107383-5107421,5107514-5107615,5107764-5107964,
           5108120-5108294,5108454-5108920,5109439-5109822
          Length = 455

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 49  PNVYEMLNFIRGVRPDNCSRYNPSDLVLNGDLAFGVEKQLENQAKMALRLANFISAFLQV 108
           PN Y  + ++  V  D+ S +N    ++N  LAFG ++ +    +   RLA+ +++ +  
Sbjct: 109 PNGYSKVTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCERLASAMASNIPN 168

Query: 109 SD 110
            D
Sbjct: 169 GD 170


>06_01_0308 +
           2229025-2229260,2229448-2230145,2230377-2230469,
           2230815-2231992
          Length = 734

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 310 AFKGTDKCDRSSSYCVPILGRGYEAGGYKCECLQAFE 346
           A K +  C  ++S C+ ++    EA GY+C C Q +E
Sbjct: 269 ALKESYACVANNSKCIDVI----EAPGYRCNCTQGYE 301


>01_01_0674 +
           5162291-5162376,5162530-5162560,5162689-5163207,
           5165561-5166010,5166050-5166134,5167374-5167399
          Length = 398

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 25  AVYRDRYHEYVQAATGPAALHAPRPNVYEMLNFIRGVRPDNCSRYNPSDLVLNGDLAFGV 84
           A YR +Y+ Y QAA   AA  AP P     L  +   R     + N S + L   L  G 
Sbjct: 154 ATYRRQYY-YQQAAAAAAAEAAPAPPSDNQLQHMISERKRR-EKLNDSFVALKAVLPTGS 211

Query: 85  EKQLENQAKMALRLANFISAFLQVSDPQEVFSGNRVADKPLTEDQMIGETLAIVLGD 141
           +K   +    A      + + L   + +      R+A +P  ++   GET A   GD
Sbjct: 212 KKDKASILIRAREHIKSLESKLSELEEKNRELEARLASRPAAKNDK-GETAAAEAGD 267


>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
          Length = 889

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 314 TDKCDRSSSYCVPILGRGYEAGGYKCECLQAFE 346
           T  C  S SYC+ +  R  E  GY+C+C   FE
Sbjct: 433 TYACRSSHSYCLNVTHRK-EFMGYRCKCSPGFE 464


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,951,032
Number of Sequences: 37544
Number of extensions: 521169
Number of successful extensions: 882
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 4
length of query: 407
length of database: 14,793,348
effective HSP length: 84
effective length of query: 323
effective length of database: 11,639,652
effective search space: 3759607596
effective search space used: 3759607596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)