Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002224-TA|BGIBMGA002224-PA|undefined
(407 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 30 2.6
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 3.4
Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical ... 29 4.5
Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical p... 29 5.9
U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein. 29 5.9
U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein. 29 5.9
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 7.9
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 7.9
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 82 FGV-EKQLENQAKMALRLANFISAFLQVSDPQEVFSGNRVADKPLTEDQMI 131
FG+ E LE ++ + A + +L+ DPQ + NR D TED ++
Sbjct: 267 FGLSESDLEENSEDLITFATDLRRYLETEDPQSTSTTNRRKDSISTEDVIL 317
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 308 SNAFKGTDKCDRSSSYCVPILGRGYEA-GGYKCECLQAFE 346
SN+ D+C+ S + C P G Y+CEC + +E
Sbjct: 1713 SNSCVDIDECEESRNNCDPASAVCVNTEGSYRCECAEGYE 1752
>Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical
protein T26H2.8 protein.
Length = 387
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 41 PAALHAP-----RPNVYEMLNFIRGVRPDNCSRYNP 71
P +L +P +PN++ ++ V P NCSR NP
Sbjct: 2 PVSLESPEAPLLKPNIFGFFRYLLRVSPYNCSRSNP 37
>AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical
protein C27A12.2 protein.
Length = 625
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 9 IQGLPSELEKAPAFLRAV--YRDRYHEYVQAATGPAALH 45
+Q +P+E+E+ P + Y + + E+V+AA GP+ H
Sbjct: 261 VQQVPTEIEETPTIKQQSIPYENLHFEHVEAAPGPSEPH 299
>Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical
protein C50H2.3 protein.
Length = 838
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 297 DINQCPDKYYVSNAFKGTDKCDRSSSYCVPILGRGYEAGGYKC-----ECLQAFEYPFED 351
D+N+C + + N K + +R S+ L GY GY C CL F++ ++D
Sbjct: 279 DVNECLRRPEMCN--KNAECINREGSFICTCL-EGYAGNGYNCTVSKNSCLDKFDHDYKD 335
>U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 297 DINQCPDKYYVSNAFKGTDKCDRSSSYCVPILGRGYEAGGYKC-----ECLQAFEYPFED 351
D+N+C + + N K + +R S+ L GY GY C CL F++ ++D
Sbjct: 279 DVNECLRRPEMCN--KNAECINREGSFICTCL-EGYAGNGYNCTVSKNSCLDKFDHDYKD 335
>U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 297 DINQCPDKYYVSNAFKGTDKCDRSSSYCVPILGRGYEAGGYKC-----ECLQAFEYPFED 351
D+N+C + + N K + +R S+ L GY GY C CL F++ ++D
Sbjct: 279 DVNECLRRPEMCN--KNAECINREGSFICTCL-EGYAGNGYNCTVSKNSCLDKFDHDYKD 335
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 169 TELNVRKFRLEDLARLNSTEEVYTNKPWFQFL----KQRWSSNFDSLEQYFLKMNIRDSE 224
T + R+ DL ++ ST++V N W Q L K + + +F KMNI+
Sbjct: 1641 TAFHSREGEKVDLVKIVSTKDVRIND-WLQALEAEMKHTLARQLAASLTHFSKMNIQTMT 1699
Query: 225 AGKYLKHYERFP 236
Y++ ++FP
Sbjct: 1700 TDDYVEWLDKFP 1711
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 169 TELNVRKFRLEDLARLNSTEEVYTNKPWFQFL----KQRWSSNFDSLEQYFLKMNIRDSE 224
T + R+ DL ++ ST++V N W Q L K + + +F KMNI+
Sbjct: 1641 TAFHSREGEKVDLVKIVSTKDVRIND-WLQALEAEMKHTLARQLAASLTHFSKMNIQTMT 1699
Query: 225 AGKYLKHYERFP 236
Y++ ++FP
Sbjct: 1700 TDDYVEWLDKFP 1711
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.137 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,129,356
Number of Sequences: 27539
Number of extensions: 446209
Number of successful extensions: 856
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 15
length of query: 407
length of database: 12,573,161
effective HSP length: 83
effective length of query: 324
effective length of database: 10,287,424
effective search space: 3333125376
effective search space used: 3333125376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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