GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002223-TA|BGIBMGA002223-PA|undefined
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    29   0.99 
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    27   4.0  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   7.0  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   9.2  

>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 28  IRDAFDEVRGKMDKINSENCYISHLDDLYLSEDSVSHHPDVKEININPV 76
           IRD FD +R  ++ +   N  +S  +++  + +SV+H  D+  I    V
Sbjct: 482 IRDVFDRIRFVLNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLITTKDV 530


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 271 DCGRLSKWLVGAVSPVADIYPRHTQFRHIEYPTYTAAVVMEMDYERIDINQCPPSPGNDR 330
           DC  +++  +  + P+  +YP   +F  + Y  +     + + Y   DI +   SP ++ 
Sbjct: 129 DCNEITQLWIDRIEPIIKLYP--NRFSQVSYEDFLRMSAVMLAYS-FDIEK-TKSPISNE 184

Query: 331 PNKFASTARCKE 342
             K A+    KE
Sbjct: 185 NEKSAAETSIKE 196


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 256 NDETPGPVNWTRPYFDCGRLSKW 278
           N   P  +NWTR + DC     W
Sbjct: 15  NASNPNQINWTRYWIDCLSSVPW 37


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 80  RTAMLHLHNMAMNRAFFWSFVLQTRFIRPAINDTYDPGMMYYFLSAVADVAANPYINASA 139
           + +ML  HN    R  +W ++ +   +RP INDTYD        +   + +  P +NA+ 
Sbjct: 53  KASMLGFHNW---RRTYWLYLKK---LRP-INDTYDAPFAIGCKNVAYEASQYPRMNATF 105

Query: 140 IYFSPN 145
           +  + N
Sbjct: 106 MVLARN 111


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,617
Number of Sequences: 5004
Number of extensions: 83628
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 4
length of query: 350
length of database: 2,362,478
effective HSP length: 73
effective length of query: 277
effective length of database: 1,997,186
effective search space: 553220522
effective search space used: 553220522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)