Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002223-TA|BGIBMGA002223-PA|undefined
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 30 2.4
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 2.4
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469... 30 2.4
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 30 2.4
01_05_0225 - 19501643-19501903,19503974-19504477 29 4.2
02_05_0063 - 25523140-25524405 29 7.3
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 28 9.7
06_03_1499 + 30593336-30593750,30594352-30595343 28 9.7
>08_01_0475 -
4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 30.3 bits (65), Expect = 2.4
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 29 RDAFDEVRGKMDKINSENCYISH-LDDLYLSEDSVSHHPDVKEININPVFPNRTAMLHLH 87
R F E R +INS N ++SH L ++ S D V+ PD V P R A +
Sbjct: 107 RSFFRETRLVSHQINSYNDFVSHGLQKMFDSLDEVTVEPDYDP--SKKVGPWRHATIKFG 164
Query: 88 NMAMNRAFFW 97
+ + FW
Sbjct: 165 RVELEEPVFW 174
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 114 YDPGMMYYFLSAVADVAANPYINASAIYFSPNMSYTSSYRGFFNKTLPRFAP 165
Y P Y ++ + ++P N S++ ++P+ +Y+ S +++ T P ++P
Sbjct: 1787 YSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSP 1838
>04_04_1323 +
32644956-32645096,32645488-32646126,32646701-32646907,
32647020-32647100,32647686-32648566,32648641-32648932,
32649657-32650673,32651334-32651605,32651992-32652493
Length = 1343
Score = 30.3 bits (65), Expect = 2.4
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 29 RDAFDEVRGKMDKINSENCYISH-LDDLYLSEDSVSHHPDVKEININPVFPNRTAMLHLH 87
R FDE+ +INS N ++SH L +L+ S V+ P N P R A++
Sbjct: 156 RSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGP-GGWRHAIIKFG 214
Query: 88 NMAMNRAFFWS 98
+ + FWS
Sbjct: 215 RVQLEEPVFWS 225
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 30.3 bits (65), Expect = 2.4
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 14/85 (16%)
Query: 166 RAFRADDFNDPVHLQKISTMNTFIIEDLGA-----FEPDSLSKDYT--------SEFYRT 212
RA ADDF+ PVH +K+S +N+F+ + + + +PD S+ ++ + +Y+
Sbjct: 585 RAAVADDFHAPVHSRKLS-VNSFVGDSVNSTKSMLTDPDVCSEGFSGLKFSFGLTPYYKK 643
Query: 213 NEWYKVWLPDRVERRHDTKTTYQVE 237
E+ V D +++ +T+ T +++
Sbjct: 644 EEYDNVDKVDSMDKGDNTQMTEKLD 668
>01_05_0225 - 19501643-19501903,19503974-19504477
Length = 254
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 284 SPVADIYPRHTQFRHIEYPTYTAAVVMEMDYERIDINQCPPSPGNDRPNKFASTA 338
S VA + H Q P Y+ A V + Y I I Q PP G+ ++ A+ A
Sbjct: 103 SAVAAVRAFHEQPAASRSPCYSLAPVGGVAYSTIPIQQPPPQDGSSSDHRAATAA 157
>02_05_0063 - 25523140-25524405
Length = 421
Score = 28.7 bits (61), Expect = 7.3
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 260 PGPVNWTRPYFDCGRLSKWLVGAVSPVADIYPRHTQFRHIEYPTY 304
PGP +W R + + AV P+ + PR I P +
Sbjct: 185 PGPSSWKRKRAAAAAANTFAADAVKPIRTVKPRAADLLQISQPAH 229
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 28.3 bits (60), Expect = 9.7
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 183 STMNTFIIEDLGAFEPDSLSKDYTSEFYRTNEWYKVWLPDRVERRHDTKTTYQVEIRYAN 242
S+MN F+ + F + L KD + EF +N+ ++ +E T V ++
Sbjct: 889 SSMNGFV-KRYDRFFNEKLQKDDSEEFQTSNDKVEIKTSSPIEIHASQVYTRAVFQLFSE 947
Query: 243 NTNETFTFHGPPGNDET 259
++ ++ PG DE+
Sbjct: 948 ELTDSLSYMVKPGEDES 964
>06_03_1499 + 30593336-30593750,30594352-30595343
Length = 468
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 110 INDTYDPGMMYYFLSAVADVAANPYI 135
+N+T+ + Y+F A +DVA P +
Sbjct: 73 VNETHGRALFYWFFEAASDVATKPLV 98
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,832
Number of Sequences: 37544
Number of extensions: 477494
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 11
length of query: 350
length of database: 14,793,348
effective HSP length: 83
effective length of query: 267
effective length of database: 11,677,196
effective search space: 3117811332
effective search space used: 3117811332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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