Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002223-TA|BGIBMGA002223-PA|undefined
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 38 0.012
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 31 1.4
SB_2052| Best HMM Match : RNA_pol_L (HMM E-Value=0.11) 30 2.4
SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65) 29 4.3
SB_46762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018) 29 5.6
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 37.9 bits (84), Expect = 0.012
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 264 NWTRPYFDCGRLSKWLVGAVSPVADIYPRHTQFRHIEYPTYTAAVVMEMDYERIDINQCP 323
+WTRPYFDC W+V ++P + E + V ++++ IDINQC
Sbjct: 306 HWTRPYFDCFGGKSWMVTFLAPFFN-----------ETSQFLGVVSIDIELNDIDINQCD 354
Query: 324 PSPGNDRPN-------KFASTARCKETTE 345
+ +F T RCK +T+
Sbjct: 355 SDKKTEYEGSEVTSFLEFLGTHRCKPSTK 383
Score = 33.5 bits (73), Expect = 0.26
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 265 WTRPYFDCGRLSKWLVGAVSPVADIYPRHTQFRHIEYPTYTAAVVMEMDYERIDINQC 322
W RPYFDC W+V ++P Y QF V ++++ +DINQC
Sbjct: 1005 WIRPYFDCFGGKIWMVTYLAP---FYNASNQF--------LGVVSLDIELNAVDINQC 1051
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 31.1 bits (67), Expect = 1.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 242 NNTNETFTFHGPPGNDETPGPVNWTRPYFDCGRL 275
N T PG ++ PGP++W R DC L
Sbjct: 830 NPDTNTVLVDDEPGINKVPGPIDWNRDKDDCSEL 863
>SB_2052| Best HMM Match : RNA_pol_L (HMM E-Value=0.11)
Length = 118
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 139 AIYFSPNMSYTSSYRGFFNKTL--PRF---APRAFRADDFNDPVHLQKISTMNTFIIEDL 193
A FSP + ++ G T+ PR + R DD D V L ++ F +E +
Sbjct: 26 AACFSPGVIKVNTVNGVKQATVINPRLDTCSREVLRHDDLKDRVELSRVRDHFIFSVESI 85
Query: 194 GAFEPDSL 201
GA P+ L
Sbjct: 86 GALRPEVL 93
>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
Length = 963
Score = 29.5 bits (63), Expect = 4.3
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 190 IEDLGAFEPDSLSKDYTSEFYRTNEWYKVWLPDRVERRHDTKTTYQVEIRYANNTNETFT 249
+E+ G E L K S+ ++N + + + + KT++ +R++ + F
Sbjct: 686 VEEFGPEELAMLGKCLCSDLKKSNSFGRSLFAGILTNEREMKTSFYFFVRFSETYHPDFV 745
Query: 250 FHGPPGNDETP 260
G P D P
Sbjct: 746 LQGLPSKDFLP 756
>SB_46762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 133 PYINASAIYFSPNMSYTSSYRGFFNKTLP 161
PYIN S YF N Y ++ R + N P
Sbjct: 45 PYINTSRAYFDTNWPYINTNRPYININRP 73
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 133 PYINASAIYFSPNMSYTSSYRGFFNKTLPRF 163
PYIN S YF N Y + R + P+F
Sbjct: 80 PYINTSRAYFDTNWPYINHNRPYIESPPPQF 110
>SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018)
Length = 949
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 67 DVKEININPVFPNRTAMLHLHNMAMNRAFFWSFVLQTRFIRPAINDTYDPGMMYYFLSAV 126
D ++ +P++P + H A N +F + L ++ + I D ++ G L +
Sbjct: 661 DTEKSADSPIYPKEYQAIIGHGFATN--WFKTPELLLKYHQRNIQDVFEKGFRNLRLRSR 718
Query: 127 ADVAANPYINASAIYFSPNMS 147
AD+ PY N +F N++
Sbjct: 719 ADLYEAPYNNTQFSWFLGNLT 739
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 25 EWQIRDAFDEVRGKMDKINSE-NCYISHLDDLYLSEDSVSHHPDVKE-----ININPVFP 78
+W++R+A +E+R + + E + Y + LD DS +PD K+ +NI+ V
Sbjct: 3413 QWELREAIEELRATLKGVEEERDRYENELD------DSRKQYPDAKDEIKHNMNISKVLN 3466
Query: 79 NRT 81
+RT
Sbjct: 3467 DRT 3469
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 97 WSFVLQTRFIRPAINDTYDPGMMYYFLSAVADVAANPYINASAIYFSPNMSYTSSYR 153
W LQT + P + Y+ Y A + + ++A Y+ ++ YTS YR
Sbjct: 443 WDTYLQTMGMFPYLPPQYNMSPQYNMPPMGAGLYGSDQMSALGPYYGRDLMYTSQYR 499
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.135 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,015,813
Number of Sequences: 59808
Number of extensions: 578650
Number of successful extensions: 1127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 14
length of query: 350
length of database: 16,821,457
effective HSP length: 83
effective length of query: 267
effective length of database: 11,857,393
effective search space: 3165923931
effective search space used: 3165923931
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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