GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002223-TA|BGIBMGA002223-PA|undefined
         (350 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            30   0.083
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   3.1  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 30.3 bits (65), Expect = 0.083
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 23   QYEWQIRDAFDEVRGKMDKINSENCYISHLDDLYLSEDSVSH 64
            QY+ +    F +VRGK  K+ SE  YI   + L L +  +S+
Sbjct: 2561 QYDVRAERTFKQVRGKDGKVMSEKYYIRDANGLVLMDMDMSY 2602


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 23   QYEWQIRDAFDEVRGKMDKINSENCYISHLDDLYLSEDSVS-----HHPDVK 69
            QY+ +    F +VR K + + SE  YI   +   L +  ++     H PDV+
Sbjct: 2551 QYDVRAERTFKQVRAKDETVLSEKYYIRDANGFVLMDIDMAYLTNDHPPDVR 2602


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,483
Number of Sequences: 2123
Number of extensions: 18504
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 5
length of query: 350
length of database: 516,269
effective HSP length: 65
effective length of query: 285
effective length of database: 378,274
effective search space: 107808090
effective search space used: 107808090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)