GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002223-TA|BGIBMGA002223-PA|undefined
         (350 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2859|AAN13829.1|  819|Drosophila melanogaster CG31195-P...   566   e-161
AE013599-3611|AAF47012.1|  176|Drosophila melanogaster CG18679-P...    39   0.009

>AE014297-2859|AAN13829.1|  819|Drosophila melanogaster CG31195-PA
           protein.
          Length = 819

 Score =  566 bits (1398), Expect = e-161
 Identities = 243/328 (74%), Positives = 282/328 (85%), Gaps = 1/328 (0%)

Query: 19  GVAGQYEWQIRDAFDEVRGKMDKINSENCYISHLDDLYLSEDSVSHHPDVKEININPVFP 78
           GV  Q+EWQ RDAFDE++ + DK+N++NC I H  DL++  D+VSH PD+KEIN+NPVFP
Sbjct: 21  GVFAQHEWQARDAFDEIKRQFDKVNADNCPIQHHSDLFMPMDAVSHKPDIKEINVNPVFP 80

Query: 79  NRTAMLHLHNMAMNRAFFWSFVLQTRFIRPAINDTYDPGMMYYFLSAVADVAANPYINAS 138
           NRTA+LHL NMA++R+FFWS++LQ+RFIRPAINDTYDPGMMYYFLS VADV+ANP+INAS
Sbjct: 81  NRTALLHLQNMALSRSFFWSYILQSRFIRPAINDTYDPGMMYYFLSTVADVSANPHINAS 140

Query: 139 AIYFSPNMSYTSSYRGFFNKTLPRFAPRAFRADDFNDPVHLQKISTMNTFIIEDLGAFEP 198
           A+YFSPN SY+SSYRGFFNKT PRF PR FR DDFNDP+HLQKIST NTF ++DLGA  P
Sbjct: 141 AVYFSPNSSYSSSYRGFFNKTFPRFGPRTFRLDDFNDPIHLQKISTWNTFDVQDLGAHHP 200

Query: 199 DSLSKDYTSEFYRTNEWYKVWLPDRVERRHDTKTTYQVEIRYANNTNETFTFHGPPGNDE 258
           DS+SKDYT + Y+ NEWY+ WLPD VE RHDTK TYQVEIRYANNTNET+TFHGPPG++E
Sbjct: 201 DSISKDYTHDLYKINEWYRAWLPDNVEGRHDTKITYQVEIRYANNTNETYTFHGPPGSEE 260

Query: 259 TPGPVNWTRPYFDCGRLSKWLVGAVSPVADIYPRHTQFRHIEYPTYTAAVVMEMDYERID 318
            PGP+ +TRPYFDCGR +KWLV AV P+ADIYPRHTQFRHIEYP YTA  V+EMD+ERID
Sbjct: 261 NPGPIKFTRPYFDCGRSNKWLVAAVVPIADIYPRHTQFRHIEYPKYTAVSVLEMDFERID 320

Query: 319 INQCPPSPGNDRPNKFASTARC-KETTE 345
           INQCP   GN  PN FA TARC KETTE
Sbjct: 321 INQCPLGEGNKGPNHFADTARCKKETTE 348



 Score = 48.8 bits (111), Expect = 1e-05
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 15/153 (9%)

Query: 196 FEPDSLSK-DYTSEFYRTNEWYKVWLPDRVERRHDTKTTYQVEIRYANN-TNETFTFHGP 253
           F+ + L++ + T E Y   +++K +L  R     D   T+ ++I+  +N T E    +  
Sbjct: 584 FKVEDLARLNKTHELYTEKKYFK-FLKQRWNTNFDDLETFYMKIKIRHNETGEYQQKYEH 642

Query: 254 PGNDETPGPVN---WTRPYFDC-GRLSKWLVGAVSPVADIYPRHTQFRHIEYPTYTAAVV 309
             N      +    WT+P FDC G + KWLV    P         +        +   V 
Sbjct: 643 YPNSYRAANIKHGYWTQPQFDCDGYVKKWLVTYAVPFFGWDSLKVKLE------FKGVVA 696

Query: 310 MEMDYERIDINQCPPSPGNDRPNKFASTARCKE 342
           + MD  ++DINQCP       PN F +T +C E
Sbjct: 697 VSMDMLQLDINQCP--DWYYEPNAFKNTHKCDE 727


>AE013599-3611|AAF47012.1|  176|Drosophila melanogaster CG18679-PA
           protein.
          Length = 176

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 310 MEMDYERIDINQCPP--SPGNDRP-NKFASTARCKETT 344
           +++D  R+DI+QCP   +PG  RP N FA T +CK+ T
Sbjct: 14  IDIDLRRVDIDQCPQRHTPGTKRPLNIFAGTDKCKQRT 51


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,155
Number of Sequences: 52641
Number of extensions: 840755
Number of successful extensions: 1570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1567
Number of HSP's gapped (non-prelim): 3
length of query: 350
length of database: 24,830,863
effective HSP length: 86
effective length of query: 264
effective length of database: 20,303,737
effective search space: 5360186568
effective search space used: 5360186568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)