GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002223-TA|BGIBMGA002223-PA|undefined
         (350 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-7|CAA86760.2|  473|Caenorhabditis elegans Hypothetical pr...    31   0.92 
U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical p...    29   3.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z46791-7|CAA86760.2|  473|Caenorhabditis elegans Hypothetical
           protein C09G5.1 protein.
          Length = 473

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 27  QIRDAFDEVRGKMDKINSENCYISHLDDLYLSEDSVS-----HHPDVKEININPVFPNRT 81
           Q+ D   + R K DK N+ NC IS+   L  +ED+ +        +V+E+N   +F  R+
Sbjct: 351 QVHDMVAQYREKKDKFNNGNCEISYEMALQPNEDNATVQRNFEKKEVREMNQASLFVRRS 410

Query: 82  AM 83
            +
Sbjct: 411 LL 412


>U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical
           protein ZK1248.13 protein.
          Length = 604

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 266 TRPYFDCGRLSKWLVGAVSP-VADIYPRHTQFRHIEYPTYTAAVVMEMDYERIDINQCPP 324
           T+  F C +L   L   + P V D+  +  +F H  Y T    V M  D E +   +CP 
Sbjct: 383 TKSEFTC-KLEHMLASFIRPEVIDVMNQCMKFAHSAYRTRELLVTMANDKELLSRMKCPQ 441

Query: 325 S 325
           S
Sbjct: 442 S 442


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
           protein F55F10.1 protein.
          Length = 4368

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 101 LQTRFIRPAINDTYDPGMMYYFLSAVADVAANPYI-NASAIYFSPNMSYTSSY 152
           ++TRF    +++T DP  +   +SA     +  ++ N    Y S    Y SSY
Sbjct: 583 VRTRFTEFFVSETADPHQLSLIVSAYLPTVSQQFVENLVKFYLSAKQLYPSSY 635


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
           protein Y51H7BM.1 protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 36  RGKMDKINSENCYI---SHLDDLYLSEDSVSHHPDVKEININ-----PVFPNRTAML-H- 85
           +G  DK  ++ C +     L+  Y+++D +S    VK + I      P+ P +  +L H 
Sbjct: 87  KGIFDKPYNKGCIMMKWKSLEKNYIADDKISVSICVKILRIKGISNPPLLPEKKFVLTHT 146

Query: 86  LHNMA-MNRAFFWSFVLQTRFIRP-AINDTYDPGMMYYFLSAVADVAANPYINASAIYFS 143
           + N++ M     +    + RF  P AI+   + G +  +LS + +V+     +   ++ +
Sbjct: 147 IRNVSSMEEGKLYKGSTEERFQIPWAISSQKEKGYLKVYLSCLKEVSNASEWSIDTVFET 206

Query: 144 PNMSYTSSYRGFFNKTL 160
             +S      GFF   L
Sbjct: 207 KRLSIRRDANGFFGAGL 223


>AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical
           protein W03G9.5 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 298 HIEYPTYTAAVVMEMDYERIDINQCPPSPGNDRPNKFASTARCKETTE 345
           H E  T T  VV+E D   +D+++    P N+R           +TTE
Sbjct: 311 HFEKKTSTLPVVIEKDMTEVDLSKLLNVPQNERNITMEEIIAAGKTTE 358


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,627,017
Number of Sequences: 27539
Number of extensions: 445909
Number of successful extensions: 1061
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 5
length of query: 350
length of database: 12,573,161
effective HSP length: 82
effective length of query: 268
effective length of database: 10,314,963
effective search space: 2764410084
effective search space used: 2764410084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)