Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002222-TA|BGIBMGA002222-PA|IPR012335|Thioredoxin fold,
IPR010987|Glutathione S-transferase, C-terminal-like,
IPR004046|Glutathione S-transferase, C-terminal,
IPR012336|Thioredoxin-like fold, IPR004045|Glutathione S-transferase,
N-terminal
(216 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 55 5e-08
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 42 5e-04
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05) 37 0.015
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55) 30 1.3
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057) 30 1.3
SB_7750| Best HMM Match : Ion_trans (HMM E-Value=7.7e-13) 29 3.9
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13) 28 5.2
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 28 5.2
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22) 28 6.8
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22) 28 6.8
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 27 9.0
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 54.8 bits (126), Expect = 5e-08
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 10/165 (6%)
Query: 48 LNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLY 107
L+P +T+P L + + S II YL A LY D R VDQ + DI T
Sbjct: 43 LSPFNTLPLLETKEGTFFSSNTIIRYLA---ASSDKLYGSDLFQRGQVDQ--WLDITTCD 97
Query: 108 QRFSDYFYPQVFAGAPADKAKN-EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVS 166
+ G + AK + + L ++K L G+K++ G ++T+AD S+ S++
Sbjct: 98 FEAAVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157
Query: 167 SLEAS--DIDFKKYANVKRWYETV--KSTAPGYQEANEKGLEAFK 207
+ S D D K Y N+ WY + G +E ++ + FK
Sbjct: 158 VILTSLGDEDRKPYQNIVSWYTALVESDNTVGSKEFPKESHKPFK 202
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 43 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 93
PE+L +NP VP +V +G +++ES I ++ ++ ++ P+DP RA
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349
>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
Length = 142
Score = 36.7 bits (81), Expect = 0.015
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 88 DPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPADKAKNEKVQEALQLLDKFL--EG 145
DP RALV Q + I + Q + Q + + + Q L+K L
Sbjct: 18 DPHKRALVRQ-ISMTIASGIQPIQNLKVLQYVGPDKKVEWGHYWIDRGFQCLEKMLVQTA 76
Query: 146 QKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEAN 199
KY G ++T+ADL L+ V + +D +Y + R +E ++ ++EA+
Sbjct: 77 GKYCVGDDITMADLCLVPQVYNANRFKVDMSRYPTIARIHEALEQ-VDAFKEAH 129
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 42 KPEYLKLNP--QHTVPTLVD-DGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 93
KPE+ + +P + VPTL DG I ES I +L + Y K LYP DP A++
Sbjct: 65 KPEWFQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRK-IPLYPCDPYAKS 118
>SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)
Length = 330
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 120 AGAPADKAKN--EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKK 177
AG +DK K E+ +E +QL DK LEGQ+ L ++++ + +ID ++
Sbjct: 101 AGELSDKQKQKLEEYEERIQLQDKELEGQR---------EQLLKLSTLVDEQQKEIDMRE 151
Query: 178 YANVKRWYETVKSTAPGYQEANEKGLEAFK 207
R ET KS Q+ +KG E K
Sbjct: 152 ----GRLSETEKSLVKHKQDIKKKGTELVK 177
>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
Length = 976
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 120 AGAPADKAKN--EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKK 177
AG +DK K E+ +E +QL DK LEGQ+ L ++++ + +ID ++
Sbjct: 539 AGELSDKQKQKLEEYEERIQLQDKELEGQR---------EQLLKLSTLVDEQQKEIDMRE 589
Query: 178 YANVKRWYETVKSTAPGYQEANEKGLEAFK 207
R ET KS Q+ +KG E K
Sbjct: 590 ----GRLSETEKSLVKHKQDIKKKGTELVK 615
>SB_7750| Best HMM Match : Ion_trans (HMM E-Value=7.7e-13)
Length = 284
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 153 NLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEANEKGLEA 205
+LTV S IA + D +F A WY V +T GY N K A
Sbjct: 218 SLTVVLFSSIAYYVEKDVEDTNFSSIA-AAMWYTIVTTTTLGYVTQNAKNCHA 269
>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 75 VNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSD 112
V KY KG+ DP A V+ + +FD+G +++ FSD
Sbjct: 309 VEKYLKGTKRV--DPSLNAAVNGQ-FFDLGLMHKYFSD 343
>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
Length = 440
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 149 VAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEANEK 201
V P+ +DL A+VSS+ K++N + + ET+ A +E +EK
Sbjct: 207 VTEPDSQESDLEATATVSSINTEPHKTSKHSNKQDFKETLPDLAISRKEKHEK 259
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 76 NKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPA 124
N + SSL + P A L Q+LY + LYQ YP F G P+
Sbjct: 293 NGEVEKSSLPMDSPYALMLQQQQLYLQLQVLYQN-----YPCQFVGLPS 336
>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
Length = 1296
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 63 SIWESRAIITYLVNKYAKGSSLYPEDPKAR-----ALVDQRLYFD---IGTLYQRFSDYF 114
+++E + +LV K+ SSL E P AR A+ ++ D IG+ + +
Sbjct: 667 ALYEHKGSKIHLVKKFDSNSSLQFEKPPARESRFSAIAEEVDLTDVSLIGSHKRPHHHWS 726
Query: 115 YPQVFAGAPADKAKNEK 131
P+VF G+ D + N K
Sbjct: 727 TPEVFRGSRVDDSNNNK 743
>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
Length = 774
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 68 RAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLY 107
R I+Y+ N+Y+K ++ Y E A +Y D LY
Sbjct: 302 RGGISYIANRYSKANNKYMESYDETAPSKYFMYLDANNLY 341
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 43 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVD 96
P Y+ HTV T + S+ E TY YA G ++ PE+ ++D
Sbjct: 1052 PRYVSTWNPHTVLTYLKSLPSLREKLTKATYSEAGYAYGPAVSPENSNTTDIID 1105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,353,115
Number of Sequences: 59808
Number of extensions: 230037
Number of successful extensions: 659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 13
length of query: 216
length of database: 16,821,457
effective HSP length: 79
effective length of query: 137
effective length of database: 12,096,625
effective search space: 1657237625
effective search space used: 1657237625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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