GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002221-TA|BGIBMGA002221-PA|undefined
         (90 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    27   0.32 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   2.3  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    23   5.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    23   7.0  
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    23   9.2  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    23   9.2  

>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 13 KDPPTRKHSDEFNFEGLSEEELQHYIK 39
          KD  T  H   F F+ + E+E +H +K
Sbjct: 40 KDTDTSSHMTHFGFKDVPEDEKEHLVK 66


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 6   DRGLARQKDPPTRKHSD--EFNFEGLSEEELQHYIKMLLVK 44
           D   +  K P T K++      FEG+ EE+ Q Y    L+K
Sbjct: 593 DTNKSTSKSPKTPKNTKFGYQEFEGIDEEDAQDYSPSPLIK 633


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 4   VTDRGLARQKDPPTRKHSDEFNFEGLSEEELQH 36
           + DRGL  ++D       D+ + E + E  L+H
Sbjct: 963 INDRGLLVEEDAEETGEDDDLSEEMIEESLLRH 995


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 6/31 (19%)

Query: 15   PPTRKHSDEFN------FEGLSEEELQHYIK 39
            P   KHS + N       +G++E  +QH+IK
Sbjct: 1059 PMAAKHSTKVNEPAKELLDGINETHIQHFIK 1089


>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
          Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 21 SDEFNFEGLSEEEL 34
          SDE +FEGL EE +
Sbjct: 38 SDESDFEGLEEETI 51


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 11  RQKDPPTRKHSDEFN--FEGLSEEELQHYIKML 41
           R+K    +K    F     GLSEEE+  Y+ ML
Sbjct: 560 REKMEARQKFEQHFGEGLVGLSEEEIIAYVTML 592


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,416
Number of Sequences: 5004
Number of extensions: 7911
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 6
length of query: 90
length of database: 2,362,478
effective HSP length: 61
effective length of query: 29
effective length of database: 2,057,234
effective search space: 59659786
effective search space used: 59659786
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)