GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002221-TA|BGIBMGA002221-PA|undefined
         (90 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    25   9.8  
03_01_0252 - 1963884-1963937,1964030-1964213,1964347-1964423,196...    25   9.8  

>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 13  KDPPTRKHSDEFNFEGLSEEELQHYIKMLL 42
           K+ P+    +  N EG   E LQ  +K+LL
Sbjct: 393 KNRPSSSQQEADNLEGYFREVLQKQVKLLL 422


>03_01_0252 -
          1963884-1963937,1964030-1964213,1964347-1964423,
          1964629-1964799,1964984-1965160,1965303-1965932
          Length = 430

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 9  LARQKDPPTRKHSDEFNFEGLSE 31
          LA    PP +   +EFNF+ LSE
Sbjct: 69 LASMAAPPPQHPHEEFNFDCLSE 91


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,855
Number of Sequences: 37544
Number of extensions: 52432
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 14,793,348
effective HSP length: 69
effective length of query: 21
effective length of database: 12,202,812
effective search space: 256259052
effective search space used: 256259052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)