GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002221-TA|BGIBMGA002221-PA|undefined
         (90 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL772197-5|CAM15087.1|  711|Homo sapiens chromosome X open readi...    29   2.3  
AL772197-4|CAH71713.1|  682|Homo sapiens chromosome X open readi...    29   2.3  

>AL772197-5|CAM15087.1|  711|Homo sapiens chromosome X open reading
           frame 23 protein.
          Length = 711

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 7   RGLARQKDPPTRKHSDEFNFEG-LSEEELQH 36
           RG  +   PP R  +D F FEG   E+EL+H
Sbjct: 146 RGSGKGGKPPQRSIADSFRFEGKWHEDELRH 176


>AL772197-4|CAH71713.1|  682|Homo sapiens chromosome X open reading
           frame 23 protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 7   RGLARQKDPPTRKHSDEFNFEG-LSEEELQH 36
           RG  +   PP R  +D F FEG   E+EL+H
Sbjct: 146 RGSGKGGKPPQRSIADSFRFEGKWHEDELRH 176


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,212
Number of Sequences: 224733
Number of extensions: 240223
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 73,234,838
effective HSP length: 68
effective length of query: 22
effective length of database: 57,952,994
effective search space: 1274965868
effective search space used: 1274965868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)