GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002221-TA|BGIBMGA002221-PA|undefined
         (90 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical p...    25   6.5  
U41017-4|AAC48214.1|  278|Caenorhabditis elegans C.elegans homeo...    25   6.5  

>Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK637.10 protein.
          Length = 503

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 6/18 (33%), Positives = 15/18 (83%)

Query: 19  KHSDEFNFEGLSEEELQH 36
           KH+D++ + G+ +E+++H
Sbjct: 89  KHADKYGWNGIDQEKIKH 106


>U41017-4|AAC48214.1|  278|Caenorhabditis elegans C.elegans homeobox
           protein 41 protein.
          Length = 278

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 8   GLARQKDPPTRKHSDEF-NFEGLSE 31
           G  ++ D P R+HS+ F N EG SE
Sbjct: 137 GKRKRDDLPAREHSETFSNVEGSSE 161


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,016
Number of Sequences: 27539
Number of extensions: 45335
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 12,573,161
effective HSP length: 69
effective length of query: 21
effective length of database: 10,672,970
effective search space: 224132370
effective search space used: 224132370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)