GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002220-TA|BGIBMGA002220-PA|undefined
         (660 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   1.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   1.3  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    24   3.8  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    24   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   8.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 434 DSTKSNITELNKRIQSVNDETLLLTQERDLLKSKVNEE 471
           D  + +I  +++  +   D+ + L QE++ LKS+V  E
Sbjct: 326 DMCEQDIIRIDRNTRFNQDKIVALRQEQETLKSQVQRE 363


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 597 QAAEKLGLLESKVEC---QRRRRGETAARLHAALQAHWRHALRILAAPHHDLGTHSHSTP 653
           + A  L L E +V+     RR + +  ++  AA Q +  +A       HH  G H H+  
Sbjct: 275 ELARNLNLTERQVKIWFQNRRMKNKKNSQRQAAQQQNNNNAATNNQNHHHHAGHHIHAQH 334

Query: 654 SNVSEH 659
             V+ H
Sbjct: 335 HVVNHH 340


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 384 LDNVNVMLSNKDKEIDVLKENYDTVMRLNKQ 414
           +D     L+  +++ DV+K+NY  V  L K+
Sbjct: 65  IDEETYKLTPLNEQFDVIKDNYRKVTDLKKR 95


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 459 QERDLLKSKVNEERSRCAVIEQQLCEKQNQCSEVLKK 495
           + RD  ++K +E   RCA +E++ C  +   ++ LKK
Sbjct: 151 RSRDARRAKEDEIAIRCAFLERENCHLK-FVTDTLKK 186


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 617 GETAARLHAALQAHW 631
           G +A+  H+A Q+HW
Sbjct: 352 GNSASNRHSAWQSHW 366


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.126    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,870
Number of Sequences: 317
Number of extensions: 5107
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 660
length of database: 114,650
effective HSP length: 61
effective length of query: 599
effective length of database: 95,313
effective search space: 57092487
effective search space used: 57092487
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)