GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002219-TA|BGIBMGA002219-PA|IPR007233|Sybindin-like
protein, IPR011012|Longin-like
         (145 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.27 
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    24   0.62 
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    24   0.62 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   7.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   7.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    20   7.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 0.27
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 75  ETPSGLKFVMNTDNQ 89
           ETPSG+  ++N DNQ
Sbjct: 472 ETPSGISSLLNLDNQ 486


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 15  LLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSK 51
           LL  G WN   Q    +     L   M+ S+ SF+ +
Sbjct: 97  LLSMGGWNEGSQKYSQVAANPGLRQAMVTSVLSFIDQ 133


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 15  LLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSK 51
           LL  G WN   Q    +     L   M+ S+ SF+ +
Sbjct: 97  LLSMGGWNEGSQKYSQVAANPGLRQAMVTSVLSFIDQ 133


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
          transcription factor Labialprotein.
          Length = 353

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 50 SKISPLDPKDGFSHYKTSKYTLHCLETPSGLKF 82
          S+ +P  P++ + H++T       + T +GL +
Sbjct: 53 SEETPPSPQEVYYHHQTIPQDNPIINTETGLSY 85


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
          protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 50 SKISPLDPKDGFSHYKTSKYTLHCLETPSGLKF 82
          S+ +P  P++ + H++T       + T +GL +
Sbjct: 53 SEETPPSPQEVYYHHQTIPQDNPIINTETGLSY 85


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
          protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 50 SKISPLDPKDGFSHYKTSKYTLHCLETPSGLKF 82
          S+ +P  P++ + H++T       + T +GL +
Sbjct: 53 SEETPPSPQEVYYHHQTIPQDNPIINTETGLSY 85


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,853
Number of Sequences: 317
Number of extensions: 1436
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 114,650
effective HSP length: 51
effective length of query: 94
effective length of database: 98,483
effective search space:  9257402
effective search space used:  9257402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)