GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002219-TA|BGIBMGA002219-PA|IPR007233|Sybindin-like
protein, IPR011012|Longin-like
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    80   2e-16
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    67   9e-13
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    30   0.16 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   6.1  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   6.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.1  

>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 19/152 (12%)

Query: 1   MTIYNLYIFDRYGTLLYYGEWNRSKQSGM----------SIEEE-GKLMYGMLFSIKSFV 49
           MTIY  YI+ R    ++   W  S ++ M          SIE++  KL++G++FS+++ V
Sbjct: 1   MTIYAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMV 60

Query: 50  SKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYM 109
            KI+    +D F  Y TSKY LH  ETP+ L+ +  T+ +   +  +L++IY  +YV+++
Sbjct: 61  KKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFV 118

Query: 110 IRNPLCEMGEP------IVSDLFKSKLDLFIK 135
           +++PL     P      I  ++F+  LD F++
Sbjct: 119 VKHPLYTHVPPSAEEGGINCEIFRITLDRFVR 150


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 67.3 bits (157), Expect = 9e-13
 Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 3   IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 62
           ++ L I +R G+L++  E+  S  +      E  ++ G +  + +  ++ISPL    G  
Sbjct: 1   MHALIIINRAGSLIFQREFGSSPTA--LTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQ 58

Query: 63  HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 122
             +   + +H L+T +G+KFV+ T+ +    R  L+K Y E+Y  Y+++NP   +  PI 
Sbjct: 59  LLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFY-ELYSDYVLKNPFYTLEMPIK 117

Query: 123 SDLFKSKLDLFI 134
             LF  +L  +I
Sbjct: 118 CQLFDEQLKRYI 129


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 76  TPSGLKFVMNTDNQ-AQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKL 130
           TPS ++F++   NQ A  ++   ++++ E+Y+K ++ +P  +  +PI S  F  K+
Sbjct: 75  TPSNMRFMLLHQNQSADNIKLFFQELH-ELYIKTLM-SPFYQPNQPIRSQAFDLKV 128


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 2   TIYNLYIFDRYGTLLY-YGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSK 51
           ++ N Y+    G L++ +   +RSK + +++ E    ++ +L+S  SF+ +
Sbjct: 687 SLANTYVICILGVLIWQFFLLSRSKFAKINVIERSYFVFALLYSFLSFLQR 737


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 44  SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 79
           S++S++  IS  DPK  F H     ++ + L    G
Sbjct: 471 SVESWLLDISDEDPKFAFVHQWNDAFSFYILNASDG 506


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/27 (29%), Positives = 19/27 (70%)

Query: 108 YMIRNPLCEMGEPIVSDLFKSKLDLFI 134
           +++ +PL E  + ++S L +SK+++ I
Sbjct: 684 FVLESPLRESSKDVISSLLRSKMEVSI 710


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,654
Number of Sequences: 5004
Number of extensions: 29513
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 2,362,478
effective HSP length: 67
effective length of query: 78
effective length of database: 2,027,210
effective search space: 158122380
effective search space used: 158122380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)