Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002219-TA|BGIBMGA002219-PA|IPR007233|Sybindin-like
protein, IPR011012|Longin-like
(145 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333... 91 2e-19
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024 70 6e-13
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263... 70 8e-13
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016... 32 0.16
01_06_0085 + 26289952-26290333,26290439-26290551,26291284-26291865 30 0.64
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 28 3.4
01_05_0508 - 22804809-22805231,22805775-22806797 27 5.9
>01_05_0102 -
18131640-18131655,18132928-18133046,18133186-18133300,
18134072-18134325
Length = 167
Score = 91.5 bits (217), Expect = 2e-19
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 15/129 (11%)
Query: 6 LYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISP----------- 54
LY+F+R G L Y EW+R ++ + ++ KLM+G+LFS++SF +KI P
Sbjct: 36 LYVFNRGGVCLLYREWHRPLRT-LDPTQDQKLMFGLLFSLRSFTAKIDPTTAEKGNLGVP 94
Query: 55 LDPKDGFSHY--KTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRN 112
L P G S Y KT+ Y L+ LE+PSG+K ++ T + RD LK IY +YV+Y+++N
Sbjct: 95 LLPGQGCSFYSFKTNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIY-NLYVEYVVKN 153
Query: 113 PLCEMGEPI 121
PL G PI
Sbjct: 154 PLYAPGTPI 162
>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
Length = 143
Score = 70.1 bits (164), Expect = 6e-13
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 3 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 62
IY+L+I ++ G L+YY ++ +G + + + + S+ + ++SP +G
Sbjct: 6 IYSLFIINKSGGLIYYKDYG---SAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGID 62
Query: 63 HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 122
+ + LHC ++ +G KF + AQ + LLK IY E+Y ++++NP EM PI
Sbjct: 63 LLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-ELYTDFVLKNPFYEMEMPIR 121
Query: 123 SDLFKSKLDLFIKQ 136
+LF L I++
Sbjct: 122 CELFDLNLAQVIQK 135
>06_01_0367 -
2636487-2636498,2636655-2636724,2636831-2636937,
2637208-2637226,2637383-2637470,2638175-2638303,
2638428-2638506,2639658-2639720,2640437-2640535,
2641583-2641740,2642926-2643094,2643174-2643239
Length = 352
Score = 69.7 bits (163), Expect = 8e-13
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 3 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 62
IY+L+I ++ G L+YY ++ +G + + + + S+ + ++SP +G
Sbjct: 6 IYSLFIINKSGGLIYYKDYG---SAGRTDTNDSLRLASLWHSMHAISQQLSPTHGCEGID 62
Query: 63 HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 122
+ + LHC ++ +G KF + AQ + LLK IY E+Y ++++NP EM PI
Sbjct: 63 LLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-ELYTDFVLKNPFYEMEMPIR 121
Query: 123 SDLFKSKL 130
+LF L
Sbjct: 122 CELFDLNL 129
>03_04_0019 +
16500877-16501029,16501184-16501240,16501560-16501668,
16501837-16502021,16502103-16502182,16502869-16503085,
16503394-16503633,16503720-16504028
Length = 449
Score = 32.3 bits (70), Expect = 0.16
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 16 LYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLE 75
+++ + N + +I + G + Y +L S+ +F+S I L K G +K + L+CL
Sbjct: 145 IFFWDPNALGERLYTIIKFGLVQYMILKSLCAFLSSILELFGKYGDGEFKCQTWALYCL- 203
Query: 76 TPSGLKFVMNTDNQAQGVRDLLKKI 100
+KF T + Q +R L K I
Sbjct: 204 ----VKFYNATHEKLQEIRPLAKFI 224
>01_06_0085 +
26289952-26290333,26290439-26290551,26291284-26291865
Length = 358
Score = 30.3 bits (65), Expect = 0.64
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 10 DRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDP 57
D ++ YGE +++ +G++ E + LFS K F+S++ +P
Sbjct: 33 DLRNNIINYGELSQAAYTGLNRERRSRYAGSCLFSRKDFLSRVDVSNP 80
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 7 YIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYK 65
++ D +GTL YYG N+ + G + ++ G +FS F+++ +P + S +K
Sbjct: 204 FVLDSHGTLFYYG--NKGQSQGAASQQTAGEGTG-VFSRFRFLNQKAPTQGDNALSCHK 259
>01_05_0508 - 22804809-22805231,22805775-22806797
Length = 481
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 49 VSKISPLD-PKDGFS-HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 94
+ K P D PK GF YK +Y LH L NT N G+R
Sbjct: 346 IGKEIPNDIPKHGFDVFYKNQEYKLHYKLETKHLHRNRNTANSIDGIR 393
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,965,990
Number of Sequences: 37544
Number of extensions: 148929
Number of successful extensions: 288
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 14,793,348
effective HSP length: 76
effective length of query: 69
effective length of database: 11,940,004
effective search space: 823860276
effective search space used: 823860276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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