GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002219-TA|BGIBMGA002219-PA|IPR007233|Sybindin-like
protein, IPR011012|Longin-like
         (145 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical ...   115   2e-26
U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    50   5e-07
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    30   0.57 
Z75550-6|CAA99924.2|  747|Caenorhabditis elegans Hypothetical pr...    30   0.75 
AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin ...    30   0.75 
AL132860-20|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    29   1.3  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical
           protein DC2.3b protein.
          Length = 472

 Score =  115 bits (276), Expect = 2e-26
 Identities = 52/101 (51%), Positives = 73/101 (72%)

Query: 1   MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 60
           MTIYN+YIFDR G  LYY EW R+KQSG++  +E KL++GM+ S+KSFV +++  D    
Sbjct: 1   MTIYNVYIFDREGQCLYYDEWFRTKQSGLAPIQEYKLVFGMMLSMKSFVDRLATNDSNQT 60

Query: 61  FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIY 101
            ++YKTS Y +  LE+ + +K ++NTD  A G+RDLL KIY
Sbjct: 61  VNYYKTSAYKMTFLESATSIKIMLNTDPNATGIRDLLHKIY 101


>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 37  LMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD- 95
           ++  M  S+ +   ++SP     G    +T+++ L CL++ +G+KFV+ T   +    D 
Sbjct: 115 ILSSMFHSLFTIAVQLSPCQKSSGVEVLETTQFKLFCLQSRTGVKFVVITSAASNIAADS 174

Query: 96  LLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQ 136
           LL K+Y E+Y  + ++NP   +  PI +  F   +   +++
Sbjct: 175 LLSKMY-ELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLER 214


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 31  IEEEGKLMYGMLFSI-KSFVSKISPLDPKDGFSHYKTSKYTLHC 73
           I E G L Y  +F + ++ ++  SPL  +DG ++   S+YT  C
Sbjct: 950 ISEGGTLTYAQIFDLDETRIAWASPLIKRDGCAYPFISEYTFQC 993


>Z75550-6|CAA99924.2|  747|Caenorhabditis elegans Hypothetical
          protein T22C1.7 protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 17 YYGEWNRSKQSGMSIEEEGKLMY 39
          Y G+W   K+ G+ IE+ G+ +Y
Sbjct: 60 YQGQWQNGKRHGLGIEQRGRWLY 82


>AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin
          protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 17 YYGEWNRSKQSGMSIEEEGKLMY 39
          Y G+W   K+ G+ IE+ G+ +Y
Sbjct: 60 YQGQWQNGKRHGLGIEQRGRWLY 82


>AL132860-20|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
          protein Y56A3A.21 protein.
          Length = 159

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 53 SPLDPKDGFSHYKT---SKYTLHCLETPSGLKFVMNTDNQ 89
          S     DGF HYKT   +++TL C   P  +++    + +
Sbjct: 27 SSFSTTDGFFHYKTTFITEFTLQCSNNPKNIQYTAEVNGR 66


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 8    IFDRYGTLLYYGEWNRSKQSGMSIEEEGK 36
            + D YG  LYY +W+R       ++ +GK
Sbjct: 1409 VLDLYGRHLYYSDWHRENPYIGRVDMDGK 1437


>Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical
           protein JC8.7 protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 77  PSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRN-PLCEMGE 119
           P+G     N  N+  G RDL K  Y  I +++++R+  LC+  E
Sbjct: 210 PTGNSGKKNKKNERTGYRDLSKNAYC-INIEHLVRSLRLCQTKE 252


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
            C01G8.9a protein.
          Length = 1724

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 93   VRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 135
            V  +++ +YA + + Y     L E G+PI+ D  K  ++  +K
Sbjct: 996  VNVIVEHLYATLSIMYPAEFQLTEPGKPIIMDESKETVEKMMK 1038


>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
          protein T20G5.2 protein.
          Length = 468

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 37 LMYGMLFSIKSFVSKISPLDPKDG 60
          ++YG + S+K  V++ S LDP++G
Sbjct: 69 MIYGGMRSMKGMVTETSVLDPEEG 92


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 5   NLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISP--LDPKDGFS 62
           N+Y + R+     + E  R ++    I   GKL+  ML  I + V ++ P  + P + F 
Sbjct: 443 NVYNWGRFSRHFNHHERQRYQREQYIIVNTGKLLVYMLGVINNDVLQVEPSFMSPLNIFK 502

Query: 63  HYK 65
            YK
Sbjct: 503 GYK 505


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,673,836
Number of Sequences: 27539
Number of extensions: 146740
Number of successful extensions: 308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 13
length of query: 145
length of database: 12,573,161
effective HSP length: 75
effective length of query: 70
effective length of database: 10,507,736
effective search space: 735541520
effective search space used: 735541520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)