GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002219-TA|BGIBMGA002219-PA|IPR007233|Sybindin-like
protein, IPR011012|Longin-like
         (145 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   3.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.1  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 4   YNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKS 47
           YN  IF   GT+  +  W     + +  +++ + +   L SI +
Sbjct: 207 YNSDIFAMIGTIFLWLFWPSFNSAALEGDDQQRAIINTLLSISA 250


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 50  SKISPLDPKDGFSHYKTSKYTLH 72
           S  S  DPK+ + +   + YT H
Sbjct: 104 SSTSSNDPKNQYKNQNNNHYTSH 126


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 44 SIKSFVSKISPLDP 57
          S+K+ +S + P+DP
Sbjct: 17 SVKNEISTVEPVDP 30


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,140
Number of Sequences: 429
Number of extensions: 1816
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 145
length of database: 140,377
effective HSP length: 52
effective length of query: 93
effective length of database: 118,069
effective search space: 10980417
effective search space used: 10980417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)