GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002218-TA|BGIBMGA002218-PA|undefined
         (73 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    23   0.33 
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   1.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   1.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      18   9.4  

>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative
          cytochrome P450 monooxigenase protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 34 ALSTCIRLCELGVDPEVLAHVIKEIR 59
          A ++   +C LGV PE+   V +E+R
Sbjct: 2  AAASSFFICILGVYPEIQEKVYQELR 27


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 21  QISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 58
           ++   +  G D  ++S C  L  L    EV   ++KE+
Sbjct: 291 EVDTFMFEGHDTTSVSICYTLMLLANHREVQEEILKEM 328


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 21  QISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 58
           ++   +  G D  ++S C  L  L    EV   ++KE+
Sbjct: 291 EVDTFMFEGHDTTSVSICYTLMLLANHREVQEEILKEM 328


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 28  TGLDVEALSTCIRLCELGVDPEVLAH 53
           TG+    ++  +  C   +D + LAH
Sbjct: 234 TGVGTLVVNDVVASCYATIDSQWLAH 259


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.130    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237
Number of Sequences: 317
Number of extensions: 372
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 73
length of database: 114,650
effective HSP length: 45
effective length of query: 28
effective length of database: 100,385
effective search space:  2810780
effective search space used:  2810780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)