GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002218-TA|BGIBMGA002218-PA|undefined
         (73 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   0.70 
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   1.6  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   1.6  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    24   2.1  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    23   4.9  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    23   6.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   6.5  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    23   6.5  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 8   QVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDP--EVLAH---VIKEIRKMG 62
           Q  +A +T++ I  ++ L     + + L  CI+ CE  ++   E+ A    + K + ++G
Sbjct: 287 QYKKAWDTYKDITYLNNLAAAYFEADQLDDCIKTCEDAIEQGRELRADFKLIAKALGRLG 346

Query: 63  ENVQKASNL 71
              QK  +L
Sbjct: 347 TTYQKRGDL 355


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 3   SERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHV 54
           +E+  Q+ +A + F + +   +L +     ++   C  +C+LG+  ++L H+
Sbjct: 55  TEKKIQIAKALDNFGVDY--IELTSPVASEQSRQDCEAICKLGLKCKILTHI 104


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 7   AQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDP 48
           A +  A   ++   Q++Q LN  + ++ +S     CE   DP
Sbjct: 249 AMLRTAHAIYRKFDQLTQALNVAIRLDDMSLIKEDCEAATDP 290


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 19  IHQI-SQLLNTGLDVEAL 35
           IH+I  QLLN G+ VEAL
Sbjct: 289 IHKIYEQLLNNGIQVEAL 306


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 14   ETFQLIHQISQLLNTGLDVEALSTCIRLCEL 44
            +TF    + S L + G   +++ + IRLCEL
Sbjct: 1076 DTFAYYIKASLLEHLGETTDSVPSAIRLCEL 1106


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 28  TGLDVEALSTCIRLCELGVDPEVLAHVIKEIRKMGE 63
           TG+ ++ L + IRL  +  D  V+  ++++++ + E
Sbjct: 145 TGMKIDVLFSKIRLAYVYADMRVVGQLLEKLKPLIE 180


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 3699

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 40 RLCELGVDPEVLAHVIKEIRKMGENV 65
          RLC++G+D +  A+   EIR   ++V
Sbjct: 50 RLCDVGLDSKQKANTAIEIRDALDDV 75


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 45  GVDPEVLAHVIKEIRKMGENVQ 66
           G DP V   V K+I+++G +V+
Sbjct: 158 GCDPSVAHRVKKQIQQLGGHVE 179


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,150
Number of Sequences: 5004
Number of extensions: 7802
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 8
length of query: 73
length of database: 2,362,478
effective HSP length: 53
effective length of query: 20
effective length of database: 2,097,266
effective search space: 41945320
effective search space used: 41945320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)