GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002218-TA|BGIBMGA002218-PA|undefined
         (73 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544     54   1e-08
03_06_0504 - 34394442-34394729                                         52   4e-08
09_04_0131 + 14917239-14918510,14918803-14918895                       29   0.35 
11_04_0044 + 12716841-12716883,12717630-12717702,12718935-127191...    26   3.2  
06_03_0020 + 15515768-15517696                                         26   3.2  
03_04_0181 - 18192774-18192970,18193519-18193882                       26   3.2  
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611...    26   4.3  
12_02_0908 - 24214221-24215933                                         25   9.8  
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166           25   9.8  
04_04_0262 - 24024451-24025080,24025421-24026320                       25   9.8  

>03_04_0182 -
          18196447-18196482,18197058-18197149,18197262-18197544
          Length = 136

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 2  TSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 58
          T   +A   QA+E+ +L  Q+SQ+L+TGLD   LS  + LC+ G +PE LA +++E+
Sbjct: 8  TGTESAAARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 64


>03_06_0504 - 34394442-34394729
          Length = 95

 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 6  NAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 58
          +A   QA+E+ +L  Q+SQ+L+TGLD   LS  + LC+ G +PE LA +++E+
Sbjct: 5  SAAARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 57


>09_04_0131 + 14917239-14918510,14918803-14918895
          Length = 454

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 22  ISQLLNTGLDVEALSTCIRLCELGVDPEVLAH 53
           I +   +G   EAL TC R+ E+GV+P V+ +
Sbjct: 222 IDEYCKSGNLDEALVTCTRMSEVGVEPNVVTY 253


>11_04_0044 +
           12716841-12716883,12717630-12717702,12718935-12719104,
           12719996-12720316,12720999-12721195
          Length = 267

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 2   TSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPE 49
           TS +  Q  + R+ F+L+     LL      EA  T  +   +G DPE
Sbjct: 208 TSSKCCQTAEVRDLFELVFVDGLLLIVPDPSEATGTSSKTDGVGTDPE 255


>06_03_0020 + 15515768-15517696
          Length = 642

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 12  ARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIK 56
           A E F  + +   L N G     L  C  L  L V  +V AHV+K
Sbjct: 256 AIELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLK 300


>03_04_0181 - 18192774-18192970,18193519-18193882
          Length = 186

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 12 ARETFQLIHQISQLLNTGLDVEALSTCIRLCE 43
          A+E+ +L    SQ+L+T  D   LS  + LC+
Sbjct: 14 AKESLELAFWKSQILDTSCDRHTLSLLMALCD 45


>10_08_0745 -
           20260136-20260236,20260890-20260937,20261025-20261165,
           20261358-20261603,20261744-20262583,20263253-20263286
          Length = 469

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 15  TFQLIHQISQLLNTGLDVEALSTCIR-LCELGVDPEVLAHV 54
           TF+ I  +S+LL+   DV+ L  C R +C+  +  E   H+
Sbjct: 195 TFEKIVNVSKLLDACSDVDPLKECCRPVCQPAI-VEAAVHI 234


>12_02_0908 - 24214221-24215933
          Length = 570

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 25  LLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 58
           LL  G D  AL+T   + +L   PE +  V  EI
Sbjct: 360 LLTAGTDTSALTTEWAMAQLVAHPEAMTKVRAEI 393


>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
          Length = 545

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 13  RETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIRKMGE 63
           R   Q IH  + +   G D  + +    + EL   P V+A    E+R+  E
Sbjct: 328 RSNEQSIHNSTDIFAGGTDTSSTTLTWTMAELIRSPRVMAKAQAEVRQAFE 378


>04_04_0262 - 24024451-24025080,24025421-24026320
          Length = 509

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 22  ISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEIRKM---GENVQKA 68
           ++ +   G D  A++    + EL  +P+VLA    E+R++   G+ V++A
Sbjct: 299 LTDMFIAGSDTSAVTVQWAMTELVRNPDVLAKAQHEVRRVVAAGDKVREA 348


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.130    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,550
Number of Sequences: 37544
Number of extensions: 46721
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 10
length of query: 73
length of database: 14,793,348
effective HSP length: 53
effective length of query: 20
effective length of database: 12,803,516
effective search space: 256070320
effective search space used: 256070320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)