GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002217-TA|BGIBMGA002217-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (151 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    24   0.65 
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   4.6  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   4.6  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 114 AKARNIAVDCIQQNNVV 130
           A++R I ++CI+Q NV+
Sbjct: 222 AESRKIFIECIEQYNVI 238


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 133 LLNEFNEIFSEENK 146
           +L EF +IF+EE K
Sbjct: 138 ILQEFIQIFNEETK 151


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 133 LLNEFNEIFSEENK 146
           +L EF +IF+EE K
Sbjct: 138 ILQEFIQIFNEETK 151


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.136    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,180
Number of Sequences: 317
Number of extensions: 1210
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 114,650
effective HSP length: 52
effective length of query: 99
effective length of database: 98,166
effective search space:  9718434
effective search space used:  9718434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)