Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002217-TA|BGIBMGA002217-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
(151 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 80 2e-16
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 73 2e-14
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 68 5e-13
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 61 6e-11
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 50 1e-07
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 42 5e-05
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 35 0.005
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 0.40
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 28 0.53
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 27 0.93
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 27 1.2
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 25 3.7
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.5
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 24 8.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 24 8.6
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 24 8.6
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 79.8 bits (188), Expect = 2e-16
Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 5 QNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREII 64
+N +V+ + DI +T K + R L P+I Y + + A + + K+ F +I
Sbjct: 799 RNEDTVLDPSEDISAVTSVFKQYLRNLPNPIITYDQYFPFITAANCASFQDKLDGFIMVI 858
Query: 65 QALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWAPVTAKARNIAVDCI 124
++LP + + L+ ++ HL RV YS NRM NLA+VF PT++ P +R++ +D
Sbjct: 859 KSLPPAHAEILQLIIRHLARVAAYSHANRMTSKNLAVVFSPTLIRDP--DNSRDV-IDMT 915
Query: 125 QQNNVVDILLNEFNEIFS 142
+N + L++ +E+F+
Sbjct: 916 VKNYSLAFLIDHVHEVFA 933
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 72.9 bits (171), Expect = 2e-14
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 15 SDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDT 74
+D+H + LK+FFREL+EPLIP + + A +++ + I LP N T
Sbjct: 573 NDVHAVADLLKIFFRELREPLIPDNHQRDFIDAGNVEDESRRRDAVHRAINDLPDANYST 632
Query: 75 LKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTIL 108
++ L HL ++++ S+ N+M NLAI++GPTI+
Sbjct: 633 IRHLTIHLAKIKENSDVNKMSTNNLAIIWGPTII 666
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 68.1 bits (159), Expect = 5e-13
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 15 SDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDT 74
SD+ T LK + L EP+IP + + +L A I+ E KI+ E+++ L +
Sbjct: 843 SDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMKTLHPAHLSV 902
Query: 75 LKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTIL 108
+FL+ HL RV +++EKN M+ N++ VF PT++
Sbjct: 903 FRFLIAHLGRVCKHAEKNLMNSKNVSTVFAPTLM 936
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 61.3 bits (142), Expect = 6e-11
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 16 DIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPRE-AKIKEFREIIQALPQCNRDT 74
D+HV+ G LKL+ R L L+ S+ H++ P + A + E ++I LP N
Sbjct: 1137 DVHVIAGLLKLYLRNLPTNLLDTSM-HKLFELLPNVPNDSAALGELCDVISKLPPENFAL 1195
Query: 75 LKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTI 107
L LL HL R+ + + N+M+I N+ IVF PT+
Sbjct: 1196 LDSLLHHLRRIIAFEKVNKMNIRNVCIVFSPTL 1228
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 50.4 bits (115), Expect = 1e-07
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 20 LTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTLKFLL 79
L LK F REL +PL+ + LF + + ++ E +++ I LP+ +RDT++ +
Sbjct: 916 LAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMRVLHLTICLLPKGHRDTMEVIF 975
Query: 80 EHLLRVQQYSE-----KNRMHIANLAIVFGPTILWA 110
L V +S ++M I NLA V P IL++
Sbjct: 976 GFLYWVASFSHIDDEVGSKMDIHNLATVITPNILYS 1011
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 41.5 bits (93), Expect = 5e-05
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 17 IHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIK--PREAKIKEFREIIQALPQCNRDT 74
+H + F + E +IP + R +I +++ +R I LP NR
Sbjct: 122 VHDAANVFRRFINLMPEHVIPLEYYERFREPMTIPNLTDNERVEMYRRRIDELPIPNRQL 181
Query: 75 LKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWAP 111
L +LL+ L S KN M NLA +F P IL P
Sbjct: 182 LLYLLDLLSVFAMNSSKNLMTADNLAAIFQPGILSHP 218
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 35.1 bits (77), Expect = 0.005
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 19 VLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREA--KIKEFREIIQALPQCNRDTLK 76
V+ G LKL+F EL + ++P S F + + + +++ + ++ L + N TL
Sbjct: 529 VVIGVLKLYFLELPDSIVPSSAFELIRSIYMNHSNDTPYRLRLLQNLLSQLRRVNLATLS 588
Query: 77 FLLEHLLRVQQYSEKNRMHIANLA 100
++ HL R+ + NLA
Sbjct: 589 AIITHLNRLITLTPNKETFTINLA 612
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 28.7 bits (61), Expect = 0.40
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 32 KEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTLKFLLEHLL 83
K +P+ L H ++ A E ++ EI L + N+DTL +LE L
Sbjct: 2262 KPEKVPFRLTHNMVDAMGPTGYEGGFRKASEITMRLLRSNQDTLMSVLESFL 2313
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 0.53
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 61 REIIQALPQCNRDTLKFLLEHLL-RVQQYSEKNRMHIANLAIVFGPTILWAPVTAKARNI 119
+++I A N L L+ LL ++ Q+ ++N M+ NLA+ GP+ +KA NI
Sbjct: 270 QKLIDASMDKNSQKLARLIFSLLYQITQHEQENMMNAQNLALCIGPSF------SKADNI 323
Query: 120 A 120
A
Sbjct: 324 A 324
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 0.93
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 29 RELKEPLIPYSLFHRVLAACSIKPREAKIKEF-------REIIQALPQCNRDTLKFLLEH 81
+E+ EP+ + +F L + S +P +K F R + + RD LKF+ E
Sbjct: 106 QEINEPIFDFHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEK 165
Query: 82 LLRVQQYSEKNRMHIAN-------LAIVFGPTILWAPVTAKARNIAVDCIQQNNV-VDIL 133
+ + + ++ ++ I N L + T L++P AK+ I + ++V D +
Sbjct: 166 IEQYEPWASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKS-GIPLSSEHSDDVEEDRV 224
Query: 134 LNEFNEIF---SEENKTKKK 150
L+E E+F +EEN KK
Sbjct: 225 LSEKMELFQWITEENLDIKK 244
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 1.2
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 63 IIQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWAPVTAKARNIAVD 122
II+ + +C RD+L E+L+ V + + MH+ L FG I +P + + V
Sbjct: 195 IIEQIIEC-RDSLA--QEYLVEVICQAFSDNMHLQTLDTYFGTVIKLSP-SVNVTQLVVA 250
Query: 123 CIQQNNVVDILLNEFNEIFSEENKTK 148
+ N + D + E+ S E++++
Sbjct: 251 ML--NRLTDYVQREYESDSSNEDESE 274
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 3.7
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 59 EFREIIQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWAPVTAKARN 118
E R+I++ LP NR TL F +V+ +A +++ GP L+ V +
Sbjct: 256 EMRQIMKILPSENRQTLLFSATQTTKVED--------LARISLKPGP--LYVNVDSGKPT 305
Query: 119 IAVDCIQQNNVVDILLNEFNEIFSEENKTKKK 150
V+ ++Q VV F +FS + KK
Sbjct: 306 STVEGLEQGYVVVDSDKRFLLLFSFLKRNLKK 337
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 24.6 bits (51), Expect = 6.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 17 IHVLTGSLKLFFRELKEPLIPYS 39
++ L GSL+ +R+ K+PLI ++
Sbjct: 803 LNALLGSLRARYRKFKKPLIDFN 825
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 8.6
Identities = 13/73 (17%), Positives = 30/73 (41%)
Query: 27 FFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTLKFLLEHLLRVQ 86
F L+ + ++ + + ++ E + P + L FL HL ++
Sbjct: 77 FLANLQASFLGTTILGKTQVSFILRRIEETYNDVLSACDTFPAKAQKALTFLEHHLRDLE 136
Query: 87 QYSEKNRMHIANL 99
Y+EK++ ++ L
Sbjct: 137 DYAEKSKNNVETL 149
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 59 EFREIIQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVF 103
E E +Q +P+ R L FLL V + S +H+ L I++
Sbjct: 568 EESESLQKIPEAYRTHLFFLLLDTKPVYKASSTLIVHLRTLVIIY 612
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 56 KIKEFREIIQALPQCNRDTLKFLLEHLL 83
K K + ++ +LP +R KFLL H L
Sbjct: 423 KEKAIKHVLYSLPANSRGIFKFLLIHQL 450
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.136 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,484
Number of Sequences: 5004
Number of extensions: 25736
Number of successful extensions: 88
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 16
length of query: 151
length of database: 2,362,478
effective HSP length: 67
effective length of query: 84
effective length of database: 2,027,210
effective search space: 170285640
effective search space used: 170285640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)
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