Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002217-TA|BGIBMGA002217-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
(151 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 53 9e-08
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536... 50 6e-07
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 50 8e-07
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248... 45 2e-05
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642... 44 4e-05
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 43 1e-04
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 41 5e-04
01_07_0307 + 42647006-42647202,42647287-42647866 36 0.011
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 35 0.032
08_01_0759 - 7199085-7199414 30 0.91
07_03_0297 - 16383159-16383626 29 1.6
08_01_0755 - 7159471-7160124 29 2.1
07_01_0036 + 298626-299573,299973-300239 27 4.9
06_01_0984 + 7640574-7641689 27 4.9
03_06_0095 - 31612293-31612607,31612982-31613119,31613229-316133... 27 4.9
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 27 4.9
02_05_0688 - 30918499-30919602 27 4.9
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931... 27 6.4
01_06_1451 + 37451004-37451113,37451422-37451661,37451765-374518... 27 6.4
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 53.2 bits (122), Expect = 9e-08
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 24 LKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREIIQALPQCNRDTLKFLLEHLL 83
+K + + EPL +SL+ ++ I + R I++ LP N TL+F+ LL
Sbjct: 207 IKCYLASIPEPLTTFSLYDE------LRDARVSIADLRNILKKLPNVNYMTLEFVTALLL 260
Query: 84 RVQQYSEKNRMHIANLAIVFGPTILW 109
RV + S N+M +LA+ F P I+W
Sbjct: 261 RVSRKSSLNKMDSRSLAVEFAPLIMW 286
>07_03_0032 -
12651989-12652636,12652726-12652956,12653515-12653634,
12653768-12653891,12654023-12654366
Length = 488
Score = 50.4 bits (115), Expect = 6e-07
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 4 DQNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREI 63
+Q N ++ + D+H L +K +FREL E ++ SL + C+ + +E E+
Sbjct: 175 EQLNRGLVPDDIDVHCLASLIKAWFRELPEGVLD-SLSPEQVLHCNTE------EECVEL 227
Query: 64 IQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 121
++ LP L +++E + V + E N+M+ N+A+VF P T + P+TA + V
Sbjct: 228 VRLLPPTQAALLNWVVEFMADVVEEEESNKMNARNVAMVFAPNMTQMSDPLTALMHAVQV 287
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 50.0 bits (114), Expect = 8e-07
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 4 DQNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREI 63
DQ N V+ ++ D+H L +K +FREL E ++ SL + C+ + EF E+
Sbjct: 187 DQLNKGVVPEDIDVHCLASLIKAWFRELPEGVLD-SLSPEQVLQCNSE------GEFLEL 239
Query: 64 IQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 121
+ L L + +E + V + E N+M+ N+A+VF P T + P+TA + V
Sbjct: 240 VTLLRPTQAALLNWAVELMADVVEEEELNKMNARNIAMVFAPNMTQMSDPLTALMHAVQV 299
>11_01_0332 +
2483743-2484131,2486062-2486182,2486307-2486426,
2486897-2487127,2487205-2487783
Length = 479
Score = 45.2 bits (102), Expect = 2e-05
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 4 DQNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREI 63
DQ N+ ++ DIH L+G +K +FREL ++ S+ + C + ++ +
Sbjct: 189 DQLNSGIVPDGIDIHCLSGLIKAWFRELPSGVLD-SIPPEQVMQCQSE------EDCARV 241
Query: 64 IQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTA 114
+ LP L++ + + V Q + N+M+ N+A+VF P T + P+TA
Sbjct: 242 AKCLPPAEAALLEWAVNLMADVVQEEQINKMNARNIAMVFAPNMTQMSDPLTA 294
>02_05_0309 +
27762613-27763070,27763940-27764060,27764168-27764287,
27764633-27764863,27764964-27765503
Length = 489
Score = 44.4 bits (100), Expect = 4e-05
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 4 DQNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREI 63
+Q N V+ D+H LTG +K +FREL ++ SL + C+ + +E +
Sbjct: 212 EQLNMGVVPDGVDMHCLTGLIKAWFRELPSGVLD-SLTPEQVMHCNTE------EECALL 264
Query: 64 IQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 121
LP L + + + V ++ N+M+ N+A+VF P T + P+TA + V
Sbjct: 265 ASTLPPVEAALLDWAINLMADVVEHENYNKMNARNIAMVFAPNMTQMADPLTALIHAVQV 324
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 42.7 bits (96), Expect = 1e-04
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 4 DQNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREI 63
DQ N ++ + D+H L G +K +FREL ++ S+ + C + ++ +
Sbjct: 206 DQLNGGIVPEGIDVHCLAGLIKAWFRELPSGVLD-SIPPEQVMQCQSE------EDCARV 258
Query: 64 IQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTA 114
+ LP L + + + V Q + N+M+ N+A+VF P T + P+TA
Sbjct: 259 AKCLPPTEAALLDWAVNLMADVVQEEQINKMNARNIAMVFAPNMTQMADPLTA 311
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 40.7 bits (91), Expect = 5e-04
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 5 QNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREII 64
Q N+ V+ D+H L G +K +FREL ++ SL + C+ + ++ +
Sbjct: 194 QLNSGVVPDEVDLHCLAGLIKAWFRELPTGVLD-SLTPEQVMHCNTE------EDCALLA 246
Query: 65 QALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGP--TILWAPVTAKARNIAV 121
LP L + + + V ++ N+M+ N+A+VF P T + P+TA + V
Sbjct: 247 SMLPPVEAALLDWAINLMADVVEHENYNKMNARNIAMVFAPNMTQMADPLTALIHAVQV 305
>01_07_0307 + 42647006-42647202,42647287-42647866
Length = 258
Score = 36.3 bits (80), Expect = 0.011
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 4 DQNNTSVISKNS-DIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFRE 62
+Q N+ V+ + D+H L G +K +FREL P + + AA + + A +
Sbjct: 125 EQLNSGVLPEGGVDVHCLAGLIKAWFREL-----PGGMLDSLPAAEVTRCQSA--DDCAR 177
Query: 63 IIQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWA--PVTA 114
+ LP L + ++ + V + N+M N+A+VF P + A P TA
Sbjct: 178 LCARLPAAKAALLDWAVQLMADVAREERSNKMGSRNVAMVFAPNMTHAMDPFTA 231
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 34.7 bits (76), Expect = 0.032
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 4 DQNNTSVISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAACSIKPREAKIKEFREI 63
+Q T +++ D HV+ +K REL +P S +L A ++ +E++I R
Sbjct: 220 EQGRTE-FAQDEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAFRLESKESRINSMRAA 278
Query: 64 I-QALPQCNRDTLKFL 78
I + P+ NR L+ L
Sbjct: 279 ISETFPEPNRRLLQSL 294
>08_01_0759 - 7199085-7199414
Length = 109
Score = 29.9 bits (64), Expect = 0.91
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 69 QCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILW 109
Q +RD F +HLL + E N++ +A +A T LW
Sbjct: 60 QADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLW 100
>07_03_0297 - 16383159-16383626
Length = 155
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 122 DCIQQNNVVDILLNEFNEIFSEEN 145
DC+ N VVD+LL EFN+ F+E N
Sbjct: 105 DCL--NPVVDLLLIEFNDRFTETN 126
>08_01_0755 - 7159471-7160124
Length = 217
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 69 QCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWAPV 112
Q +RD F HLL + E N++ +A +A T LW V
Sbjct: 60 QADRDGSSFCYYHLLPYAAFFEGNQVKVAEVAATILSTNLWVYV 103
>07_01_0036 + 298626-299573,299973-300239
Length = 404
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 52 PREAKIKEFREIIQALPQCNRDTLKFLLEHLLRVQQYS-EKNRMHIANLAIVFG 104
PRE I E RE A P+ D + L HL R ++ NR I+ + V G
Sbjct: 320 PREISIDENREQYPATPEFLFDAVPGRLTHLRRFFMFNFSGNRNEISIIKFVLG 373
>06_01_0984 + 7640574-7641689
Length = 371
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 11 ISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLA 46
IS D H L GS+ + LK P SLF LA
Sbjct: 58 ISMTLDAHYLRGSMAAVYSLLKHASCPESLFFHFLA 93
>03_06_0095 -
31612293-31612607,31612982-31613119,31613229-31613315,
31613410-31613469,31613563-31613662,31613757-31614163,
31614335-31614805,31614910-31615032,31615396-31615479,
31615609-31615678,31615767-31615846
Length = 644
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 51 KPREAKIKEFREIIQALPQCNRDTLKFLLEHLLRVQQYSEKNRMHIANLAIVFGPTILWA 110
KP K+K + I A Q R FL + +L+++++ + ++ L GP A
Sbjct: 49 KPDAVKVK-VKSDINAEVQPGRGAQSFLRKEILQLEKHLKDQQVMRGALEKALGPNATAA 107
Query: 111 PVTAKARN 118
PV N
Sbjct: 108 PVNVSNEN 115
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 41 FHRVLAACSIKPREAKIKEFREIIQALPQC 70
+ V AAC + E + EF E ++AL QC
Sbjct: 146 YDTVAAACRLLLAERSMTEFVEAVEALAQC 175
>02_05_0688 - 30918499-30919602
Length = 367
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 11 ISKNSDIHVLTGSLKLFFRELKEPLIPYSLFHRVLAA 47
I+ D H L GS+ + LK P S+F LAA
Sbjct: 55 IAMTLDAHYLRGSMAAIYSLLKHASCPESIFFHFLAA 91
>10_06_0154 -
11291630-11292106,11292192-11292457,11293027-11293131,
11293210-11293234,11293349-11293465,11293528-11294041,
11295524-11295578,11295980-11296060,11296129-11296219,
11296321-11296417,11297465-11297529,11297950-11298108,
11298208-11298455,11300667-11300835
Length = 822
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 95 HIANLAIVFGPTILWAPVTAKARNIAVDCIQQNNVVDILLNE 136
H+ + +GP+I + TA+ N A+ C+ NN +++++ E
Sbjct: 295 HLTDFNNKYGPSIRQSVETAEHNNCALRCL--NNYLELMIEE 334
>01_06_1451 +
37451004-37451113,37451422-37451661,37451765-37451846,
37452159-37452200,37452285-37452344,37453020-37454663,
37454763-37454864,37455846-37455986,37456077-37456202,
37456376-37456543
Length = 904
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 56 KIKEFREIIQALPQCNRDT-LKFLLEHLLRVQQYSE 90
+IKE REI+ +C+ DT L+ ++H+L +Q ++
Sbjct: 713 RIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAK 748
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,793,770
Number of Sequences: 37544
Number of extensions: 131785
Number of successful extensions: 351
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 19
length of query: 151
length of database: 14,793,348
effective HSP length: 76
effective length of query: 75
effective length of database: 11,940,004
effective search space: 895500300
effective search space used: 895500300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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