GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002217-TA|BGIBMGA002217-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.4  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   5.4  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   7.2  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.2  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 3   IDQNNTSVISKNSDIHVLTGSLKL 26
           +D+ N  V+++N D   +  S+K+
Sbjct: 334 LDRQNIDVVARNEDTLQMVVSMKI 357


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 128 NVVDILLNEFNEIFSEENKTKK 149
           N  ++++ E  EIF +EN   K
Sbjct: 78  NFNEVVIREIAEIFLDENGVNK 99


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 52 PREAKIKEFREIIQALPQCNRDTLKFLLEHLLRVQQYSEKNR 93
          PR  ++K         P+  R    F  E L R+++   +NR
Sbjct: 2  PRTRRVKRSHNGKNGSPEEKRPRTAFSAEQLARLKREFAENR 43


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 128 NVVDILLNEFNEIFSEENKTKK 149
           N  ++++ E  EI+ +EN+  K
Sbjct: 78  NFNEVVVREIAEIYLDENEVNK 99


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 106 TILWAPVTAKARNIAVDCIQQNNVVDILLNEF 137
           T L    +A    I   C+++NN +D  +  F
Sbjct: 356 TALGTASSAATLPITFRCLEENNKIDSRVTRF 387


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,775
Number of Sequences: 429
Number of extensions: 1744
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)