GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002216-TA|BGIBMGA002216-PA|undefined
         (298 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   1.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.8  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 243 LKRAQTSTTINDDLKKEYETQLAIFKE 269
           L     + TINDDL+K  + ++ IF E
Sbjct: 136 LTEGAKNMTINDDLEKREKDRMDIFYE 162


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 214 RNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTST 250
           +N EV A++ ++      +   KER D + +R  + T
Sbjct: 185 QNEEVTALKIKYNPFAKAFLDAKERPDSIYQREYSPT 221


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.125    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,238
Number of Sequences: 317
Number of extensions: 1796
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 298
length of database: 114,650
effective HSP length: 56
effective length of query: 242
effective length of database: 96,898
effective search space: 23449316
effective search space used: 23449316
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 43 (21.4 bits)