Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002216-TA|BGIBMGA002216-PA|undefined
(298 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 36 0.002
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 33 0.007
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 33 0.013
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 31 0.030
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 26 1.5
AF080546-1|AAC29475.1| 432|Anopheles gambiae S-adenosyl-L-homoc... 25 2.6
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 35.5 bits (78), Expect = 0.002
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 142 ELQAALAKPGGKNQDIINSIKLQHEELLSKARGMIFDKTKLVKNQELQIEALTTQVASLK 201
+LQA +A G + + S EE L +++ + K K E E L ++ L+
Sbjct: 773 DLQAKIADGKGHRERELKSA----EEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQ 828
Query: 202 DINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKEYE 261
K ++ + VK +E++ A++ R D + T + +K+ E
Sbjct: 829 ------KGIVTAKEQAVK-LEEQIAALQQRLVEVSGTTD---EMTAAVTALKQQIKQHKE 878
Query: 262 TQLAIFKELREKYEQRVKALVAENERLK 289
+ KEL+ KY QR K L+ +N+ LK
Sbjct: 879 KMNSQSKELKAKYHQRDK-LLKQNDELK 905
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 33.5 bits (73), Expect = 0.007
Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 164 QHEELLSKARGMIFDKTKLVKNQELQIEALTTQVASLKDINQITKDLLEIRNSEVKAMED 223
++ +L+ + + D +K E I ++ +++ + +KD E ++++ M+D
Sbjct: 685 EYSQLIQEHEKELADFRAELKQTEANINSIVSEMQKTETKQGKSKDAFEKIQADIRLMKD 744
Query: 224 RFQAMEARYKAEKERYDLVLK---RAQTSTT--INDDLKKEYETQLAIFKELR-EKYEQR 277
+E R+++ KER K A TST + ++L +E +QL++ + +
Sbjct: 745 ELSRIE-RFRSPKERSLAQCKANLEAMTSTKEGLENELHQELMSQLSVQDQHEVDSLNDE 803
Query: 278 VKALVAENE 286
++ L EN+
Sbjct: 804 IRRLNQENK 812
Score = 27.1 bits (57), Expect = 0.64
Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 3/156 (1%)
Query: 129 IDLLKARVKNLETEL-QAALAKPGGKNQDIINSIKLQHEELLSKARGMIFDKTKLVKNQE 187
++ + + + LE EL Q +++ ++Q ++S+ + L + + + L +
Sbjct: 767 LEAMTSTKEGLENELHQELMSQLSVQDQHEVDSLNDEIRRLNQENKEAFTSRMSLEVTKN 826
Query: 188 LQIEALTTQVASLKD--INQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLVLKR 245
LT + KD + + + +E R ++ + A E R K + V ++
Sbjct: 827 KLENLLTNNLFRRKDELVQALQEISVEDRKRQLTNCRNEVVATEKRIKKVLTDTEEVDRK 886
Query: 246 AQTSTTINDDLKKEYETQLAIFKELREKYEQRVKAL 281
+ L+KE E+ + KE +EK E+ K +
Sbjct: 887 LSEALKQQKTLQKELESWIQKEKEAQEKLEEDGKRM 922
Score = 26.6 bits (56), Expect = 0.85
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 159 NSIKLQHEELLSKARGMIFDKTKLVKNQELQIEALTTQVASL-KDIN---QITKDLL--E 212
N K + E+ L + + I +K K ++ + EA+ + +++N Q K+L +
Sbjct: 320 NKSKERAEQELERLKITIAEKEKELEQVRPRYEAMRRKEEECSRELNLKEQKRKELYAKQ 379
Query: 213 IRNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELRE 272
R S+ + E+R + ++ K+ ++ + + + DDLKK+ Q + K+++E
Sbjct: 380 GRGSQFSSKEERDKWIQGELKSLNKQ---IKDKISHQNKLQDDLKKDIAKQGELEKKIQE 436
Query: 273 KYEQRVKALVAENERLK 289
E + V +E K
Sbjct: 437 HTESFEQLRVQIDEHNK 453
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 32.7 bits (71), Expect = 0.013
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 121 ELKVKEEEIDLLKARVKNLETELQAALAKPGGKNQDIINSIKLQHEELLSKARGMIFDKT 180
ELK I+ + R++N E + + DI + K Q L +A G +
Sbjct: 334 ELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIES--KKQEYVALKEAYGTVRRTL 391
Query: 181 KLVKNQELQIEA----LTTQVASL-KDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAE 235
+ V+ ++ IE + +V + KD QI +DL E + +E R QA+E
Sbjct: 392 QDVQAKQAAIERGMRNASERVTRIQKDARQIEQDLQERNRDGLSQVEQRKQAVETEKAQL 451
Query: 236 KERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVKALVAENERLK 289
KER D + A + ++ Y T +A K+ RE+ A +E R++
Sbjct: 452 KERND---ELASMIASAQREVDLMYNT-MAHVKDAREEKHHERCAKQSETTRIE 501
Score = 27.1 bits (57), Expect = 0.64
Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 154 NQDIINSIKLQHEELLSKARGMIFDKTKLVKNQELQIEALTTQVASLKDINQITKDLLEI 213
NQD+ S+ +E SK + F K + + ++ +D+ + + LE
Sbjct: 228 NQDLARSLLKDSDE--SK-QYTFFSKATQIDTIKQKLNECAVIAKKARDVLVVKEKSLEY 284
Query: 214 RNSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREK 273
++E+ +E++ +E+ + + +L K A + ++ + +L + E+
Sbjct: 285 LSNEIVVLEEKQSNLESAGRMGELLSELQAKLAWRNVIDQEEQLAAVDDELKKLRTSIEE 344
Query: 274 YEQRVK---ALVAENE 286
E R++ ALVA+ +
Sbjct: 345 QEHRIRNREALVAKTD 360
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.030
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 162 KLQHEELLSKARGMIFDKTKLVKNQELQIEALTTQVASLKDINQITKDLLEIRNSEVKAM 221
K + E L+ + D+TK++ ++ E L T++ LK +K L I SE+K
Sbjct: 441 KTEVEAKLTANLATLKDETKVLLEEK---EKLQTELIELKRAVDESKSALSIAESELKIC 497
Query: 222 E-----DRFQAMEARYKAEKERYDLVLKRAQTST 250
+ +R + RY E+ DL KRA+ T
Sbjct: 498 QHDEVTERRKLESLRYSYEETEKDLEEKRARLQT 531
Score = 26.2 bits (55), Expect = 1.1
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 155 QDIINSIKLQHEELLSKARGMIFDKTKLVKNQELQIEALTTQVASLKDINQITKDLLEIR 214
+D I +H+E + +K KLVK + Q + L + S + + + D
Sbjct: 329 RDQAAGILAKHDETYDALKAERVEKEKLVKEEIKQYDELVSAKESKESTLKNSLDKFAKV 388
Query: 215 NSEVKAMEDRFQAMEARYKAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKEL-REK 273
+ ++A +R + + AE++R L Q N KKE E A + L R+K
Sbjct: 389 QANMRATNERRKKTLEQIAAEEKR----LLELQDVPKKN---KKEIEESEAKIESLTRQK 441
Query: 274 YEQRVKALVAENERLKAPTQ 293
E K L A LK T+
Sbjct: 442 TEVEAK-LTANLATLKDETK 460
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 25.8 bits (54), Expect = 1.5
Identities = 24/139 (17%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 125 KEEEIDLLKARVKNLETELQAALAKPGGKNQDIINSIK--LQHEELLSKARGMIFDKTKL 182
K++E+++++ R + + L+ + G +++ + + E +SK M +
Sbjct: 255 KQQELNIIEKRKEEADEVLKEKKKEVGKMTREMAKKEQEIREVEAEMSKRHPMFIKAKEK 314
Query: 183 VKNQELQIEALTTQVASLKDINQITKDLLEIRNSEVKAMEDRFQAMEARYKAEKERYDLV 242
V + + +++ +LK + Q + E +++K + D Q +E + A +
Sbjct: 315 VAHTQKKLDG------ALKTLEQARR-ADEAHQADIKKLVDELQEVEVKRAAFENEVAGE 367
Query: 243 LKRAQTSTTINDDLKKEYE 261
K+ ++ + DL +EY+
Sbjct: 368 SKKRGSNVHLERDLVQEYD 386
>AF080546-1|AAC29475.1| 432|Anopheles gambiae
S-adenosyl-L-homocysteine hydrolase protein.
Length = 432
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 156 DIINSIKLQHEELLSKARGMIFDKTKLVKN 185
D+ N + +H ELL + RG+ + T V N
Sbjct: 134 DLTNLVHAEHPELLKEIRGLSEETTTGVHN 163
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.307 0.125 0.322
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,349
Number of Sequences: 2123
Number of extensions: 7894
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 298
length of database: 516,269
effective HSP length: 64
effective length of query: 234
effective length of database: 380,397
effective search space: 89012898
effective search space used: 89012898
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 48 (23.4 bits)
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