GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002216-TA|BGIBMGA002216-PA|undefined
         (298 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    25   0.61 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.61 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   10.0 

>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 58

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 35 IETFEPISADAETEQPEGTEKEASADKPVENNQTET 70
          ++ F+P  + AE +QP G     S++ P++N++ ++
Sbjct: 3  VQEFKPRGSSAEEQQPSGDILSPSSE-PLDNDKEQS 37


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 35 IETFEPISADAETEQPEGTEKEASADKPVENNQTET 70
          ++ F+P  + AE +QP G     S++ P++N++ ++
Sbjct: 3  VQEFKPRGSSAEEQQPSGDILSPSSE-PLDNDKEQS 37


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 162 KLQHEELLSKARGMIFDKTKLVKNQELQIEALTTQVASLKDIN 204
           K+QH E  +  R M  +  +L  N    I  + T +ASL  +N
Sbjct: 513 KVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLN 555


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 240 DLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQ-RVKAL 281
           D+V   A +ST    +L K      A F +L E++EQ R+K L
Sbjct: 278 DIVGFTAISSTYSASELVKILNELFARFDQLSERFEQLRIKIL 320


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 233 KAEKERYDLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVKALVA 283
           +   +RY    +R Q S     + +K  ET    F++ RE+   +   +++
Sbjct: 266 RTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRRERERSKESKIIS 316


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 240 DLVLKRAQTSTTINDDLKKEYETQLAIFKELREKYEQRVKALVAENERLKAPTQ 293
           ++ +   + +  IN+  +   ET +  F  LR+ +  + +  ++  E  +A TQ
Sbjct: 368 EITVPSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMSTGEMKEAITQ 421


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.125    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,979
Number of Sequences: 429
Number of extensions: 2884
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 298
length of database: 140,377
effective HSP length: 57
effective length of query: 241
effective length of database: 115,924
effective search space: 27937684
effective search space used: 27937684
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 43 (21.4 bits)