GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002215-TA|BGIBMGA002215-PA|IPR003397|Mitochondrial
import inner membrane translocase, subunit Tim17/22
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...   142   2e-35
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    41   8e-05
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    41   8e-05
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   5.9  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   5.9  

>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score =  142 bits (345), Expect = 2e-35
 Identities = 66/158 (41%), Positives = 97/158 (61%), Gaps = 5/158 (3%)

Query: 3   EYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIV 62
           ++TR+PCP+ IL+D             ++HSIKG+RN+P G   K + ++AA K R+P++
Sbjct: 5   DHTRDPCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPG--EKRISAIAAAKTRAPVL 62

Query: 63  GGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGKEQCTGNGRKCTYW 122
           GGNF VWGG+FST DC++  +R+KEDPWN+I++G  TGG LA R G          C   
Sbjct: 63  GGNFGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCA-- 120

Query: 123 RILLALIEGIGIMFTRLTAEQFKPQQPILEDPSILGQS 160
             +LA+ EG+GI   R+ AE  +P  P++ D    G +
Sbjct: 121 -CILAVFEGLGIALGRMNAEYNRPVAPVIPDAPASGST 157


>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 58  RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 108
           RS     NF + G ++S  +C +   R K D +N+I +G  TGG LA R+G
Sbjct: 99  RSFSTAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSG 149


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 47  KMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAAR 106
           ++ G L  V  R P VG +  V   +++ I+  + Y RQK    NS+ +GALTG +  + 
Sbjct: 119 RLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKST 178

Query: 107 NG 108
            G
Sbjct: 179 RG 180


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 41  PLGFSRKMLGSLAAV-KERSPIVGGNFAVWGGMFSTIDCSLVYMRQK 86
           P G+    +G L  + ++ + +V   F V   + S +DCS  ++RQK
Sbjct: 224 PFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWIRQK 270


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 73  FSTIDCSLVY-MRQKEDPWNSIMSGALTGGILAARNGKEQCTGNGRKCTYWRILLALIEG 131
           FS+ID S VY  ++++D ++   S       + +  G+E   G  R C  +  L  L  G
Sbjct: 119 FSSIDLSWVYRSKEEDDDFHDPKSS------VVSLMGEEDYLGWSRFCDLF-FLFVLSLG 171

Query: 132 IGIMFTRLTAEQF 144
           IG++F    A  F
Sbjct: 172 IGLLFIVFPALTF 184


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,629
Number of Sequences: 5004
Number of extensions: 25761
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 5
length of query: 168
length of database: 2,362,478
effective HSP length: 68
effective length of query: 100
effective length of database: 2,022,206
effective search space: 202220600
effective search space used: 202220600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)