GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002215-TA|BGIBMGA002215-PA|IPR003397|Mitochondrial
import inner membrane translocase, subunit Tim17/22
         (168 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866    140   4e-34
03_04_0070 + 17042509-17043129                                        122   2e-28
03_04_0073 + 17059358-17059921                                         43   1e-04
03_01_0102 - 826827-827411                                             34   0.068
10_08_0647 - 19576672-19577259                                         33   0.12 
03_04_0072 + 17054137-17054499                                         33   0.16 
12_02_0523 + 19988949-19989234,19992420-19992484,19992570-199926...    30   0.84 
07_01_0422 + 3220988-3221536                                           30   0.84 
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512...    27   7.8  

>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
          Length = 396

 Score =  140 bits (340), Expect = 4e-34
 Identities = 73/154 (47%), Positives = 96/154 (62%), Gaps = 8/154 (5%)

Query: 3   EYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIV 62
           E +REPCP RILDD             LFH +KG  N+P G   +++G   AV+  +P V
Sbjct: 5   ETSREPCPDRILDDVGGAFGMGAVGGSLFHFLKGTYNSPNG--ERLVGGAQAVRMNAPRV 62

Query: 63  GGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGKEQCTGNGRKCTYW 122
           GG+FAVWGG+FS  DC++V+MRQKEDPWNSI++GA TGG L+ R G       GR     
Sbjct: 63  GGSFAVWGGLFSAFDCTMVFMRQKEDPWNSIIAGAATGGFLSMRQGPGAA---GRSALMG 119

Query: 123 RILLALIEGIGIMFTRLTAEQFKPQQPILEDPSI 156
            +LLALIEG G+M  R+ A    P  P+ +DP++
Sbjct: 120 GMLLALIEGAGLMLNRVLAT--PPPLPV-DDPNL 150



 Score =  122 bits (294), Expect = 1e-28
 Identities = 63/134 (47%), Positives = 78/134 (58%), Gaps = 5/134 (3%)

Query: 6   REPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGN 65
           R+PCP RILDD              FH +KG RN+P G   +  G +  V+  +P V G 
Sbjct: 232 RDPCPDRILDDIGASFGMGAVGGSFFHFVKGLRNSPSG--ARFAGGMEGVRMNAPRVAGG 289

Query: 66  FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGKEQCTGNGRKCTYWRIL 125
           FAVW G+FS  DC+LV +RQKEDP+NSI++GA TGGILAAR G        R      +L
Sbjct: 290 FAVWCGLFSACDCALVSVRQKEDPYNSIIAGAATGGILAARQGLRAV---ARASLQGAVL 346

Query: 126 LALIEGIGIMFTRL 139
           LAL+   GIM  RL
Sbjct: 347 LALVSSFGIMMNRL 360


>03_04_0070 + 17042509-17043129
          Length = 206

 Score =  122 bits (293), Expect = 2e-28
 Identities = 61/136 (44%), Positives = 77/136 (56%), Gaps = 5/136 (3%)

Query: 6   REPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGN 65
           REPCP RILDD              FH ++G  N+P G   ++ G   AV+   P  GGN
Sbjct: 6   REPCPDRILDDVGGAFAMGAVGGTAFHFLRGAYNSPNG--HRLSGGSQAVRMSVPRTGGN 63

Query: 66  FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGKEQCTGNGRKCTYWRIL 125
           FA WGG+FS  DC++V+ RQKEDPWNSI++GA TG +L+ R G                L
Sbjct: 64  FAAWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQGPR---ATATSALVGASL 120

Query: 126 LALIEGIGIMFTRLTA 141
           LAL+EG GI+ TR  A
Sbjct: 121 LALVEGAGILLTRTMA 136


>03_04_0073 + 17059358-17059921
          Length = 187

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 1   MDEYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSP 60
           M+E    P P  +LD++            L H   G R+ P G  R + G+  AV++ +P
Sbjct: 1   MEEEWGVPYPDCVLDNAGAGFVGGAAAGTLAHLFTGLRDFPCG--RHLAGAAQAVRDGAP 58

Query: 61  IVGGNFAVWGGMFSTIDCSLVYMRQK-EDPWNSIMSGALTGGILAARNG 108
            +   +A    ++S    +L     + +DP  S+ +GA TG +   R+G
Sbjct: 59  CLATRWAARLAVYSAACHALSSATDRHDDPLVSVAAGAATGAVARLRHG 107


>03_01_0102 - 826827-827411
          Length = 194

 Score = 33.9 bits (74), Expect = 0.068
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 38  RNAPLGFSRKMLGS--LAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMS 95
           RNA  G + K+  +  L +       +G    V G +++ I+  +V +R ++D  NS+ +
Sbjct: 90  RNAEPGDTAKIRANRVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTA 149

Query: 96  GALTGGILAARNG 108
           G  TG +  A NG
Sbjct: 150 GLGTGALFRAANG 162


>10_08_0647 - 19576672-19577259
          Length = 195

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 62  VGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 108
           +G    V G M++ ++ ++V  R ++D  NS+ +G  TG +  A NG
Sbjct: 117 LGNRLGVIGLMYAGMESAMVAARDRDDWVNSVAAGLGTGALFRAANG 163


>03_04_0072 + 17054137-17054499
          Length = 120

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 86  KEDPWNSIMSGALTGGILAARNGKEQCTGNGRKCTYWRILLALIEGIGIMFTR 138
           KE+ WN + +GA T G L  R G       GR   +     AL EG  +   R
Sbjct: 8   KEESWNFVFAGAATSGFLRLRQG---AVTAGRDALWSAAFFALAEGASLAIHR 57


>12_02_0523 +
           19988949-19989234,19992420-19992484,19992570-19992642,
           19992765-19992818,19993532-19993761
          Length = 235

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 66  FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 100
           FAV  G+ S + C+L  +R K+D  N+ ++G  TG
Sbjct: 119 FAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTG 153


>07_01_0422 + 3220988-3221536
          Length = 182

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 6   REPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGN 65
           R P P R  DD             L    + F     G +RK  G  AA +   P+   N
Sbjct: 67  RPPSPPRPRDDGDVETGTGIDDATL----EAFPEVVYGEARKARGGAAATQTCCPVCLEN 122

Query: 66  FAVWGGMFSTIDCSLVYMRQKEDPW 90
           +     + +  DC  ++ R+  DPW
Sbjct: 123 YGDGDVLRALPDCGHLFHRECVDPW 147


>07_03_0463 -
           18449908-18450171,18450718-18450810,18451170-18451254,
           18451607-18451705,18452099-18452238,18453036-18453482
          Length = 375

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 55  VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSI 93
           V+E +  VG  F  + G +  + C L   R+KE P+N++
Sbjct: 159 VREEACRVGLLFGGFTGSYHALRCFLRRFRKKETPFNAV 197


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,943,719
Number of Sequences: 37544
Number of extensions: 207092
Number of successful extensions: 344
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 10
length of query: 168
length of database: 14,793,348
effective HSP length: 77
effective length of query: 91
effective length of database: 11,902,460
effective search space: 1083123860
effective search space used: 1083123860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)