GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002215-TA|BGIBMGA002215-PA|IPR003397|Mitochondrial
import inner membrane translocase, subunit Tim17/22
         (168 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical ...   142   1e-34
U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical p...    69   2e-12
Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical pr...    40   0.001
U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    31   0.56 
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    31   0.56 
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    31   0.56 

>AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical
           protein E04A4.5 protein.
          Length = 181

 Score =  142 bits (344), Expect = 1e-34
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 9/168 (5%)

Query: 1   MDEYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSP 60
           M+EYTREPCP+RI DD             +F +  G++NA  G  +K++G +  V+ RS 
Sbjct: 1   MEEYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKG--KKLVGMMREVRMRST 58

Query: 61  IVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGKEQCTGNGRKCT 120
           + G  FA WGGMFSTIDC LV +R+KEDP NSI+SG LTG +LA R+G +   G+     
Sbjct: 59  LTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGS---AI 115

Query: 121 YWRILLALIEGIGIMFTRLTAEQFKPQQP---ILEDPSILGQSQGQAQ 165
              ++LA+IEG+G++ TR       P QP    L+DP  LGQ + QA+
Sbjct: 116 LGSVILAMIEGVGLVTTRWMGAMMDPTQPPPEALDDPRSLGQ-KSQAE 162


>U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical
           protein D2096.1 protein.
          Length = 158

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 32/52 (61%), Positives = 38/52 (73%)

Query: 58  RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGK 109
           RS + G  FA WGG+FSTIDC LV  R+KED  NSI+SG LTG +LA R+ K
Sbjct: 2   RSTLAGVQFAAWGGLFSTIDCCLVANRKKEDSINSIVSGGLTGALLAIRSPK 53


>Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical
           protein C47G2.3 protein.
          Length = 213

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/54 (38%), Positives = 27/54 (50%)

Query: 55  VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 108
           +  R    G NF   G MFS  +C+L  +R K D  N   SG + GG+L  R G
Sbjct: 136 MSSRMKSYGKNFGSIGLMFSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAG 189


>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform a protein.
          Length = 967

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 115 NGRKCTYWRILLALIEGIGIMFTRLTAEQFKPQQPILEDPSILGQSQGQAQS 166
           N  K T  R+ L + +G G +F    ++QF P  PIL   S+   ++ Q  S
Sbjct: 431 NVLKNTGNRVRLLIQQGTGAIFNDSASQQFMPTTPILRPSSVQDYNRSQMGS 482


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
           DLG-1 protein.
          Length = 967

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 115 NGRKCTYWRILLALIEGIGIMFTRLTAEQFKPQQPILEDPSILGQSQGQAQS 166
           N  K T  R+ L + +G G +F    ++QF P  PIL   S+   ++ Q  S
Sbjct: 431 NVLKNTGNRVRLLIQQGTGAIFNDSASQQFMPTTPILRPSSVQDYNRSQMGS 482


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like
           protein DLG-1 protein.
          Length = 967

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 115 NGRKCTYWRILLALIEGIGIMFTRLTAEQFKPQQPILEDPSILGQSQGQAQS 166
           N  K T  R+ L + +G G +F    ++QF P  PIL   S+   ++ Q  S
Sbjct: 431 NVLKNTGNRVRLLIQQGTGAIFNDSASQQFMPTTPILRPSSVQDYNRSQMGS 482


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,878,124
Number of Sequences: 27539
Number of extensions: 148748
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 6
length of query: 168
length of database: 12,573,161
effective HSP length: 76
effective length of query: 92
effective length of database: 10,480,197
effective search space: 964178124
effective search space used: 964178124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)