GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002214-TA|BGIBMGA002214-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (516 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   8.9  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   8.9  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 439 APNPDHMIRMINE 451
           APN DH+I +I+E
Sbjct: 518 APNGDHVISLIDE 530


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 485 HVLVSADFNGCIKVFVHKAK 504
           H L+S+DF+  IK  ++  K
Sbjct: 4   HALISSDFHDVIKPLINLTK 23


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,474
Number of Sequences: 317
Number of extensions: 5009
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 516
length of database: 114,650
effective HSP length: 60
effective length of query: 456
effective length of database: 95,630
effective search space: 43607280
effective search space used: 43607280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)