Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002213-TA|BGIBMGA002213-PA|undefined
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 29 0.68
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.90
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 29 1.2
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 29 1.2
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 2.1
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 28 2.1
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.6
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 4.8
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 26 6.3
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 8.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.4
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 8.4
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.68
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 32 SVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEVTPEDDRNSIKNVVQGRRRFQELRRCM 91
SV+ +S +D +N Q L +GT +A P++ + IK+V G+RR + +
Sbjct: 248 SVSTTSVHDSEDDNLDSNNFQ-LEIGTEAKSA--APDEPQEIIKSVSGGKRRGKRKVKKY 304
Query: 92 QTEEDDEG 99
T +D+EG
Sbjct: 305 ATTKDEEG 312
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.1 bits (62), Expect = 0.90
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 240 DSLVVEPPPSSSANQSMALPSPASTIESLTREFQDSLELSQS 281
+SL V+P S S++ + L S +STI S TR +S S S
Sbjct: 975 NSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTS 1016
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 241 SLVVEPPPSSSANQSMALPSPAST-IESLTREFQDS 275
S + P PSSS + PSP+ST S+ R FQ+S
Sbjct: 198 SAIPSPLPSSSTSSWADEPSPSSTETSSIKRAFQES 233
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 228 YVPRRAGDIPGLDSLVVEPPPSSSANQSMALPSPASTIESLTREFQDSLELSQS 281
YV R A I + V+ PP+ NQS L S + ++ R QD ELS S
Sbjct: 510 YVHRYAASISSVPFSHVKSPPTVFENQSAVLASQCA--NAICRIIQDCTELSIS 561
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 8 EEFYDAEEFTPTKGSKRSS---LCKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAE 64
EEF TP K S S L K + S +P+ K K T+ P ++T +
Sbjct: 305 EEFIAKTRKTPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAEPASSTTSARD 364
Query: 65 VTPEDDRN 72
TP ++
Sbjct: 365 QTPSTPKD 372
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 28 CKSTSVTESSDVPVQDKTK--ITNTDQTLPVGTSTPTAEVTPEDDRNSIKNVVQGRRRFQ 85
C+ + T V DK I ++ + + E DD +N + + +
Sbjct: 859 CEGINQTAIGFVEKPDKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSIL-QDEVE 917
Query: 86 ELRRCMQTEEDDEGIPELDNDQQTYTLEHPFKVIAHD 122
E R+ +++ E I E+ D+ TLE ++ A+D
Sbjct: 918 ETRQDDIEKDELEDIKEVKEDENLTTLEETIEIPAND 954
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 DSSDSEEF-YDAEEFTPTKGSKRSSLCKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTP 61
D+ D+ Y+ E T K+ S++V+++ + V D+ + + +++P
Sbjct: 45 DNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDEFMQIKEEFPMKALSASP 104
Query: 62 TAEVTPE 68
TA+ +PE
Sbjct: 105 TADASPE 111
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 3 DSSDSEEFYDAEEFTPTKGS-KRSSLCKSTSVTESSDVPVQDKTKI 47
DSS S E ++ T T G S STS ES+ V +D +KI
Sbjct: 309 DSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKI 354
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 4 SSDSEEFYDAEEFT---PTKGSKRSSLCKSTSVT-----ESSDVPVQDKTKITNTDQTLP 55
S FY+ + T PT+ SS ST V+ SS QD T I +T T+
Sbjct: 247 SPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIA 306
Query: 56 VGTSTPT 62
T PT
Sbjct: 307 TSTLQPT 313
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 4.8
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 49 NTDQTLPVGTSTP------TAEVTPEDDRNSIKNVVQGRRRFQELRRCMQTEEDDEGIPE 102
N T P T TP T P NSI + + R F +RC+ EED E
Sbjct: 345 NYSNTPPRNTVTPSTARSSTLSQNPSSSSNSIPLISRNLRDFSFFKRCL--EEDIEPTLR 402
Query: 103 LDN 105
LD+
Sbjct: 403 LDH 405
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 57 GTSTPTAEVTPEDDRNSIKNVVQGRR---RFQELRRCMQTEEDDEGIPELDN 105
G +PT+ V+ N+ + GR+ + ELR C+ + +D I EL+N
Sbjct: 182 GLGSPTSLVSS----NTASKLHLGRKDIVKLSELRNCINSSKDSNQIQELEN 229
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 17 TPTKGSKRSSLCKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEVTPED 69
T T SK S++ +T E+ Q + + + TD +LP T++ +VT E+
Sbjct: 165 TETSSSKFSAVTAATITNET-----QSEKRSSQTDPSLPFKTNSLNCDVTYEE 212
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 25 SSLCKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEVTPEDDRNSI 74
S++ S+ + ES V + + T T+ + P + + P D NSI
Sbjct: 309 STISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSI 358
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 228 YVPRRAGDIPGLDSLVVEPPPSSSANQSMALPSPASTIESLTREFQDSL 276
Y+ G +P L +L ++ P S+A P+ + S+ ++ L
Sbjct: 518 YMESNLGSLPNLSTLSLQSGPDSTATWHPEFPNSSGLSASIVEKYSGEL 566
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.125 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,132
Number of Sequences: 5004
Number of extensions: 52319
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 16
length of query: 326
length of database: 2,362,478
effective HSP length: 73
effective length of query: 253
effective length of database: 1,997,186
effective search space: 505288058
effective search space used: 505288058
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 54 (25.8 bits)
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